Strain identifier

BacDive ID: 137699

Type strain: Yes

Species: Paenibacillus edaphicus

Strain Designation: T7

Strain history: CIP <- 1998, VKPM <- E.S. Shelobolina: strain T7

NCBI tax ID(s): 61623 (species)

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General

@ref: 38582

BacDive-ID: 137699

DSM-Number: 12974

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Paenibacillus edaphicus T7 is an obligate aerobe, spore-forming, mesophilic bacterium of the family Paenibacillaceae.

NCBI tax id

  • NCBI tax id: 61623
  • Matching level: species

strain history

  • @ref: 38582
  • history: CIP <- 1998, VKPM <- E.S. Shelobolina: strain T7

doi: 10.13145/bacdive137699.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus edaphicus
  • full scientific name: Paenibacillus edaphicus (Shelobolina et al. 1998) Hu et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Bacillus edaphicus

@ref: 38582

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus edaphicus

strain designation: T7

type strain: yes

Morphology

cell morphology

  • @ref: 38582
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 38582

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38582MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38582CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
38582CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
38582positivegrowth30mesophilic
38582positivegrowth10-37
38582nogrowth45thermophilic
38582nogrowth55thermophilic

culture pH

  • @ref: 38582
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 38582
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 38582
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
38582NaClpositivegrowth0 %
38582NaClnogrowth2 %
38582NaClnogrowth4 %
38582NaClnogrowth6 %
38582NaClnogrowth8 %
38582NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371raffinose+builds acid from16634
68371inulin+builds acid from15443
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371D-sorbitol+builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside+builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
38582citrate-carbon source16947
38582esculin+hydrolysis4853
38582nitrate+reduction17632
38582nitrite-reduction16301

metabolite production

  • @ref: 38582
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3858215688acetoin-
3858217234glucose-

enzymes

@refvalueactivityec
38582oxidase+
38582beta-galactosidase+3.2.1.23
38582alcohol dehydrogenase+1.1.1.1
38582gelatinase-
38582amylase+
38582DNase-
38582caseinase-3.4.21.50
38582catalase+1.11.1.6
38582tween esterase+
38582gamma-glutamyltransferase-2.3.2.2
38582lecithinase-
38582lipase-
38582lysine decarboxylase-4.1.1.18
38582ornithine decarboxylase-4.1.1.17
38582protease-
38582urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38582-+++------++++-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38582+/---+++--+++++-+---++/-+/-+/-+/-+++++++++/-++/-++/-+-++--+/-+--+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38582+++++-++++++++++++++++++++-----+--+++----+--------+--+++---++--------------------------------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrysample typecontinentisolation date
38582RussiaRUS
38582Russian FederationRUSEnvironment, SoilEurope1993

taxonmaps

  • @ref: 69479
  • File name: preview.99_150190.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_57076;97_73777;98_99266;99_150190&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: AB045093
  • Sequence Identity:
  • Total samples: 589
  • soil counts: 347
  • aquatic counts: 51
  • animal counts: 147
  • plant counts: 44

Safety information

risk assessment

  • @ref: 38582
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 38582
  • description: Bacillus edaphicus gene for 16S rRNA, partial sequence
  • accession: AB045093
  • length: 1490
  • database: ena
  • NCBI tax ID: 61623

External links

@ref: 38582

culture collection no.: CIP 105814, VKPM B-7517, DSM 12974

straininfo link

  • @ref: 94533
  • straininfo: 13132

literature

  • topic: Phylogeny
  • Pubmed-ID: 19643872
  • title: Transfer of Bacillus mucilaginosus and Bacillus edaphicus to the genus Paenibacillus as Paenibacillus mucilaginosus comb. nov. and Paenibacillus edaphicus comb. nov.
  • authors: Hu XF, Li SX, Wu JG, Wang JF, Fang QL, Chen JS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.008532-0
  • year: 2009
  • mesh: Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38582Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105814Collection of Institut Pasteur (CIP 105814)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
94533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13132.1