Strain identifier

BacDive ID: 137698

Type strain: Yes

Species: Pelistega europaea

Strain Designation: N51

Strain history: CIP <- 1998, CCUG <- 1998, LMG <- Hommez: strain N51

NCBI tax ID(s): 106147 (species)

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General

@ref: 38581

BacDive-ID: 137698

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Pelistega europaea N51 is an aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 106147
  • Matching level: species

strain history

  • @ref: 38581
  • history: CIP <- 1998, CCUG <- 1998, LMG <- Hommez: strain N51

doi: 10.13145/bacdive137698.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Pelistega
  • species: Pelistega europaea
  • full scientific name: Pelistega europaea Vandamme et al. 1998

@ref: 38581

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Pelistega

species: Pelistega europaea

strain designation: N51

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.973
38581negativeoval-shapedno

colony morphology

  • @ref: 55012
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38581MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
38581CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
38581positivegrowth37mesophilic
55012positivegrowth37mesophilic
38581positivegrowth25-45
38581nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55012aerobe
38581obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
38581citrate-carbon source16947
38581esculin-hydrolysis4853
38581nitrate-reduction17632
38581nitrite-reduction16301
38581malonate-assimilation15792

antibiotic resistance

  • @ref: 38581
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 38581
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3858115688acetoin-
3858117234glucose-

enzymes

@refvalueactivityec
38581oxidase+
38581beta-galactosidase-3.2.1.23
38581alcohol dehydrogenase-1.1.1.1
38581gelatinase-
38581amylase-
38581DNase-
38581caseinase-3.4.21.50
38581catalase+1.11.1.6
38581tween esterase-
38581lecithinase-
38581lipase-
38581lysine decarboxylase-4.1.1.18
38581ornithine decarboxylase-4.1.1.17
38581phenylalanine ammonia-lyase+4.3.1.24
38581protease-
38581tryptophan deaminase-
38581urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38581--++-+-+--++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38581-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38581-------------------------------------------------+-------------------------+--+++-------++++-+--++-

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
38581BelgiumBELEurope
38581BelgiumBELEuropeAnimal, Pigeon

Safety information

risk assessment

  • @ref: 38581
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pelistega europaea LMG10982GCA_013133775contigncbi106147
66792Pelistega europaea strain LMG10982106147.8wgspatric106147
66792Pelistega europaea LMG 109822910227858draftimg106147

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.656no
flagellatedno89.79no
gram-positiveno98.795no
anaerobicno96.715no
aerobicyes55.726yes
halophileno71.838no
spore-formingno96.245no
thermophileno98.463no
glucose-utilno76.219no
glucose-fermentno89.644no

External links

@ref: 38581

culture collection no.: CIP 105809, CCUG 39967, LMG 10982, CIP 105842

straininfo link

  • @ref: 94532
  • straininfo: 10152

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9731281Pelistega europaea gen. nov., sp. nov., a bacterium associated with respiratory disease in pigeons: taxonomic structure and phylogenetic allocation.Vandamme P, Segers P, Ryll M, Hommez J, Vancanneyt M, Coopman R, De Baere R, Van de Peer Y, Kersters K, De Wachter R, Hinz KHInt J Syst Bacteriol10.1099/00207713-48-2-4311998Animals, Bacterial Proteins/analysis, Base Composition, Base Sequence, Bird Diseases/*microbiology, Columbidae/*microbiology, DNA, Bacterial, Electrophoresis, Polyacrylamide Gel, Fatty Acids/metabolism, Gram-Negative Bacteria/*classification/genetics/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Respiratory Tract Infections/microbiology/*veterinary, Sequence Analysis, RNAEnzymology
Phylogeny24436068Description of Pelistega indica sp. nov., isolated from human gut.Prakash O, Munot H, Nimonkar Y, Sharma M, Kumbhare S, Shouche YSInt J Syst Evol Microbiol10.1099/ijs.0.059782-02014Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Gastrointestinal Tract/microbiology, Humans, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity
Phylogeny33688803Pelistega ratti sp. nov. from Rattus norvegicus of Hainan island.Zhou X, Xuan D, Hu S, Du J, Pu J, Jin D, Zhao F, Yin F, Cui X, Huang Y, Wang G, Wu Q, Lu G, Niu LInt J Syst Evol Microbiol10.1099/ijsem.0.0047332021

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38581Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105809Collection of Institut Pasteur (CIP 105809)
55012Curators of the CCUGhttps://www.ccug.se/strain?id=39967Culture Collection University of Gothenburg (CCUG) (CCUG 39967)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94532Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10152.1