Strain identifier

BacDive ID: 137676

Type strain: No

Species: Avibacterium volantium

Strain history: CIP <- 1952, NCTC, <- A. Fleming: strain 1 (= Kilian: strain HK 408), Haemophilus parainfluenzae.

NCBI tax ID(s): 762 (species)

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General

@ref: 38524

BacDive-ID: 137676

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative

description: Avibacterium volantium CIP A62 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Tongue.

NCBI tax id

  • NCBI tax id: 762
  • Matching level: species

strain history

  • @ref: 38524
  • history: CIP <- 1952, NCTC, <- A. Fleming: strain 1 (= Kilian: strain HK 408), Haemophilus parainfluenzae.

doi: 10.13145/bacdive137676.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Avibacterium
  • species: Avibacterium volantium
  • full scientific name: Avibacterium volantium (Mutters et al. 1985) Blackall et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella volantium

@ref: 38524

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Avibacterium

species: Avibacterium volantium

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.945
38524negativerod-shapedno

colony morphology

  • @ref: 38524

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38524MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
38524CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
38524positivegrowth37mesophilic
38524positivegrowth25-37mesophilic
38524nogrowth15psychrophilic
38524nogrowth22psychrophilic
38524nogrowth41thermophilic
38524nogrowth44thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38524
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
385244853esculin-hydrolysis
38524606565hippurate-hydrolysis
3852417632nitrate+reduction
3852416301nitrite+reduction

antibiotic resistance

  • @ref: 38524
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 38524
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
38524oxidase+
38524beta-galactosidase+3.2.1.23
38524alcohol dehydrogenase-1.1.1.1
38524catalase+1.11.1.6
38524gamma-glutamyltransferase+2.3.2.2
38524lysine decarboxylase-4.1.1.18
38524ornithine decarboxylase-4.1.1.17
38524urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38524-++--+----++-+-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38524---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 38524
  • sample type: Tongue
  • isolation date: 1933

Safety information

risk assessment

  • @ref: 38524
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: uncultured Avibacterium sp. strain 3012STDY6733940
  • accession: 1936169.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 1936169

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.288no
gram-positiveno98.617no
anaerobicno98.244no
aerobicno94.115no
halophileyes58.933no
spore-formingno98.778no
glucose-utilno51.33no
flagellatedno95.989no
thermophileno98.878no
glucose-fermentyes57.521no

External links

@ref: 38524

culture collection no.: CIP A62, CCM 5765, NCTC 4101, CCM 3839

straininfo link

  • @ref: 94513
  • straininfo: 2986

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38524Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20A62Collection of Institut Pasteur (CIP A62)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94513Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID2986.1