Strain identifier

BacDive ID: 137665

Type strain: No

Species: Latilactobacillus sakei

Strain history: CIP <- 1994, M.C. Montel, INRA, Theix, France <- 1982, NCDO <- DSMZ

NCBI tax ID(s): 1599 (species)

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General

@ref: 38497

BacDive-ID: 137665

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-positive, rod-shaped

description: Latilactobacillus sakei CIP 104362 is a facultative anaerobe, Gram-positive, rod-shaped bacterium of the family Lactobacillaceae.

NCBI tax id

  • NCBI tax id: 1599
  • Matching level: species

strain history

@refhistory
67770DSM 20269 <-- K. O. Stetter 136.
38497CIP <- 1994, M.C. Montel, INRA, Theix, France <- 1982, NCDO <- DSMZ

doi: 10.13145/bacdive137665.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Latilactobacillus
  • species: Latilactobacillus sakei
  • full scientific name: Latilactobacillus sakei (Katagiri et al. 1934) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus sakei
    20215Lactobacillus bavaricus
    20215Lactobacillus sake

@ref: 38497

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus sakei

type strain: no

Morphology

cell morphology

  • @ref: 38497
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38497MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
38497CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
38497positivegrowth37
67770positivegrowth37
38497positivegrowth15-45

Physiology and metabolism

oxygen tolerance

  • @ref: 38497
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
38497nitrate-reduction17632
38497nitrite-reduction16301
38497nitrate+respiration17632

metabolite tests

  • @ref: 38497
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
38497oxidase-
38497alcohol dehydrogenase+1.1.1.1
38497catalase-1.11.1.6
38497lysine decarboxylase-4.1.1.18
38497ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38497-+++------+--+------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38497---++----++++----+---+-++++++--+------+/--------+/---

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
38497GermanyDEUEurope
67770Pickled cabbage
38497GermanyDEUEuropeSauerkraut

Safety information

risk assessment

  • @ref: 38497
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
124043Lactobacillus sakei subsp. sakei gene for 16S rRNA, partial sequence, strain: JCM 1129.AB289291660nuccore214326
124043Lactobacillus bavaricus gene for 16S ribosomal RNA, partial sequence.D31679183nuccore1599

GC content

@refGC-contentmethod
6777041thermal denaturation, midpoint method (Tm)
6777042thermal denaturation, midpoint method (Tm)

External links

@ref: 38497

culture collection no.: CIP 104362, ATCC 31063, LMG 9844, NCDO 2588, NCIMB 12076, JCM 1129, BCRC 12933, CECT 4591, CECT 980, KCTC 3598, NCFB 2588, NRIC 1764, DSM 20269

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38497Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104362Collection of Institut Pasteur (CIP 104362)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy