Strain identifier
BacDive ID: 137565
Type strain: 
Species: Pseudomonas stutzeri
Strain history: IAM 12931 <-- ATCC 14405 <-- C. E. ZoBell 632.
NCBI tax ID(s): 32042 (strain), 203192 (species), 316 (species)
version 7.1 (current version)
General
@ref: 38224
BacDive-ID: 137565
keywords: genome sequence, Bacteria, mesophilic
description: Pseudomonas stutzeri CIP 107696 is a mesophilic bacterium of the family Pseudomonadaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 32042 | strain |
| 203192 | species |
| 316 | species |
strain history: IAM 12931 <-- ATCC 14405 <-- C. E. ZoBell 632.
doi: 10.13145/bacdive137565.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas stutzeri
- full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
synonyms
@ref synonym 20215 Stutzerimonas chloritidismutans 20215 Pseudomonas perfectomarinus 20215 Bacterium stutzeri 20215 Pseudomonas kunmingensis 20215 Pseudomonas chloritidismutans 20215 Stutzerimonas kunmingensis 20215 Stutzerimonas stutzeri 20215 Stutzerimonas perfectomarina 20215 Pseudomonas perfectomarina
@ref: 38224
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas stutzeri
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.534 | |
| 69480 | 99.613 | negative |
Culture and growth conditions
culture medium
- @ref: 38224
- name: MEDIUM 72- for trypto casein soja agar
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 38224 | positive | growth | 25 | mesophilic |
| 46451 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 96.721
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 85.366
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas stutzeri ATCC 14405 | GCA_015291885 | complete | ncbi | 316 |
| 66792 | Pseudomonas stutzeri ATCC 14405 = CCUG 16156 CCUG 16156 | GCA_000237885 | contig | ncbi | 32042 |
| 66792 | Pseudomonas stutzeri ATCC 14405 = CCUG 16156 | 32042.3 | wgs | patric | 32042 |
| 66792 | Pseudomonas stutzeri strain ATCC 14405 | 316.569 | complete | patric | 316 |
| 66792 | Pseudomonas stutzeri ZoBell 632, ATCC 14405 | 2529293194 | draft | img | 32042 |
| 66792 | Staphylococcus aureus BSAC2827 | GCA_900043565 | scaffold | patric | 1280 |
| 66792 | Staphylococcus aureus BSAC1818 | GCA_900044095 | contig | patric | 1280 |
External links
@ref: 38224
culture collection no.: CIP 107696, CCUG 16156, ATCC 14405, LMG 2243, NCIMB 568, JCM 20778, IAM 12931
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/323354 |
| 20218 | http://www.straininfo.net/strains/323353 |
| 20218 | http://www.straininfo.net/strains/18616 |
| 20218 | http://www.straininfo.net/strains/18615 |
| 20218 | http://www.straininfo.net/strains/205241 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 1644760 | NosR, a membrane-bound regulatory component necessary for expression of nitrous oxide reductase in denitrifying Pseudomonas stutzeri. | Cuypers H, Viebrock-Sambale A, Zumft WG | J Bacteriol | 10.1128/jb.174.16.5332-5339.1992 | 1992 | Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, Base Sequence, Blotting, Northern, Blotting, Western, Cell Membrane/enzymology, DNA, Bacterial, Electrophoresis, Polyacrylamide Gel, *Genes, Regulator, Genetic Complementation Test, Membrane Proteins/genetics/*metabolism, Molecular Sequence Data, Multigene Family, Oxidoreductases/*genetics/metabolism, Plasmids, Pseudomonas/*enzymology/genetics | Metabolism |
| Metabolism | 6329753 | NMR studies of a dihaem cytochrome from Pseudomonas perfectomarinus (ATCC 14405). | Moura I, Liu MC, LeGall J, Peck HD Jr, Payne WJ, Xavier AV, Moura JJ | Eur J Biochem | 10.1111/j.1432-1033.1984.tb08191.x | 1984 | Chemical Phenomena, Chemistry, Cytochrome c Group/*metabolism, Heme, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Models, Chemical, Oxidation-Reduction, Pseudomonas/*enzymology, Temperature | Enzymology |
| Metabolism | 6833178 | Comparison of cytochromes from anaerobically and aerobically grown cells of Pseudomonas perfectomarinus. | Liu MC, Payne WJ, Peck HD Jr, LeGall J | J Bacteriol | 10.1128/jb.154.1.278-286.1983 | 1983 | Aerobiosis, Anaerobiosis, Cell Membrane/metabolism, Cytochromes/*analysis, Pseudomonas/*metabolism, Spectrophotometry | |
| Genetics | 7811935 | Solution conformation of cytochrome c-551 from Pseudomonas stutzeri ZoBell determined by NMR. | Cai M, Timkovich R | Biophys J | 10.1016/S0006-3495(94)80590-9 | 1994 | Amino Acid Sequence, *Bacterial Proteins, Biophysical Phenomena, Biophysics, Cytochrome c Group/*chemistry/genetics, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Molecular Structure, Protein Conformation, Protein Folding, Pseudomonas/*chemistry/genetics, Solutions, Thermodynamics | Proteome |
| Enzymology | 8245846 | Antibody and DNA probes for detection of nitrite reductase in seawater. | Ward BB, Cockcroft AR, Kilpatrick KA | J Gen Microbiol | 10.1099/00221287-139-9-2285 | 1993 | Antibodies, Bacterial, Base Sequence, DNA Probes/genetics, DNA, Bacterial/analysis/genetics, Genes, Bacterial, Molecular Sequence Data, Nitrite Reductases/*analysis/genetics/immunology, Pseudomonas/*enzymology/genetics/isolation & purification, Seawater/*analysis, Species Specificity, *Water Microbiology | Phylogeny |
| Phylogeny | 8573496 | 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. | Bennasar A, Rossello-Mora R, Lalucat J, Moore ER | Int J Syst Bacteriol | 10.1099/00207713-46-1-200 | 1996 | Base Sequence, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Pseudomonas/*classification/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics | Genetics |
| Genetics | 8950369 | Sequence analysis of an internal 9.72-kb segment from the 30-kb denitrification gene cluster of Pseudomonas stutzeri. | Glockner AB, Zumft WG | Biochim Biophys Acta | 10.1016/s0005-2728(96)00108-9 | 1996 | Amino Acid Sequence, *Genes, Bacterial, Molecular Sequence Data, *Multigene Family, Nitrogen Fixation/genetics, Open Reading Frames, Pseudomonas/*genetics, Restriction Mapping | Transcriptome |
| Metabolism | 10368138 | Nitrate and nitrite control of respiratory nitrate reduction in denitrifying Pseudomonas stutzeri by a two-component regulatory system homologous to NarXL of Escherichia coli. | Hartig E, Schiek U, Vollack KU, Zumft WG | J Bacteriol | 10.1128/JB.181.12.3658-3665.1999 | 1999 | Amino Acid Sequence, *Anion Transport Proteins, Bacterial Proteins/chemistry/*genetics/*metabolism, Base Sequence, Carrier Proteins/genetics/*metabolism, Cloning, Molecular, DNA-Binding Proteins/chemistry/*genetics/metabolism, Escherichia coli/*metabolism, *Escherichia coli Proteins, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Nitrate Reductase, Nitrate Reductases/genetics/*metabolism, Nitrate Transporters, Nitrates/*metabolism, Nitrites/*metabolism, Oxidation-Reduction, Oxygen Consumption, Protein Kinases/chemistry/*genetics/metabolism, Pseudomonas/*genetics/*metabolism, Recombinant Proteins/metabolism, Restriction Mapping, Sequence Alignment, Sequence Homology, Amino Acid, Transcription, Genetic, Transcriptional Activation | Enzymology |
| Pathogenicity | 10540232 | Comparative responses of Pseudomonas stutzeri and Pseudomonas aeruginosa to antibacterial agents. | Tattawasart U, Maillard JY, Furr JR, Russell AD | J Appl Microbiol | 10.1046/j.1365-2672.1999.00811.x | 1999 | Anti-Bacterial Agents/*pharmacology, Microbial Sensitivity Tests, Pseudomonas/*drug effects, Pseudomonas aeruginosa/*drug effects, Species Specificity | Phylogeny |
| Enzymology | 10691974 | Structural investigations of the CuA centre of nitrous oxide reductase from Pseudomonas stutzeri by site-directed mutagenesis and X-ray absorption spectroscopy. | Charnock JM, Dreusch A, Korner H, Neese F, Nelson J, Kannt A, Michel H, Garner CD, Kroneck PM, Zumft WG | Eur J Biochem | 10.1046/j.1432-1327.2000.01131.x | 2000 | Amino Acid Sequence, Base Sequence, Binding Sites, Copper/*chemistry, DNA Primers, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Oxidoreductases/*chemistry/genetics, Protein Conformation, Pseudomonas/*enzymology, Sequence Homology, Amino Acid, Spectrum Analysis | Genetics |
| Metabolism | 15743947 | Functional domains of NosR, a novel transmembrane iron-sulfur flavoprotein necessary for nitrous oxide respiration. | Wunsch P, Zumft WG | J Bacteriol | 10.1128/JB.187.6.1992-2001.2005 | 2005 | Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/*metabolism, Catalytic Domain, Energy Metabolism, Flavoproteins/chemistry/genetics/metabolism, Gene Expression Regulation, Bacterial, Iron-Sulfur Proteins/chemistry/genetics/metabolism, Membrane Proteins/*chemistry/genetics/*metabolism, Molecular Sequence Data, Mutagenesis, Nitrous Oxide/*metabolism, Protein Structure, Tertiary, Pseudomonas stutzeri/genetics/*metabolism, Recombinant Proteins/chemistry/genetics/metabolism | Genetics |
| Genetics | 22328767 | Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies. | Pena A, Busquets A, Gomila M, Bosch R, Nogales B, Garcia-Valdes E, Lalucat J, Bennasar A | J Bacteriol | 10.1128/JB.06648-11 | 2012 | DNA, Bacterial/*chemistry/*genetics, Denitrification, *Genome, Bacterial, Molecular Sequence Data, Pseudomonas stutzeri/*genetics/*isolation & purification/metabolism, Seawater/*microbiology, Sequence Analysis, DNA | Transcriptome |
| 24189920 | Immunofluorescence detection of the denitrifying strain Pseudomonas stutzeri (ATCC 14405) in seawater and intertidal sediment environments. | Ward BB, Cockcroft AR | Microb Ecol | 10.1007/BF00171890 | 1993 | |||
| Metabolism | 26905325 | Enhanced denitrification of Pseudomonas stutzeri by a bioelectrochemical system assisted with solid-phase humin. | Xiao Z, Awata T, Zhang D, Zhang C, Li Z, Katayama A | J Biosci Bioeng | 10.1016/j.jbiosc.2015.11.004 | 2016 | *Denitrification, Electricity, Electrochemical Techniques, Electrodes, Electron Transport, Electrons, *Humic Substances, Nitrates/chemistry/metabolism, Nitrogen/chemistry/metabolism, Oxidation-Reduction, Pseudomonas stutzeri/*metabolism | |
| Metabolism | 26975755 | Denitrification by Pseudomonas stutzeri coupled with CO2 reduction by Sporomusa ovata with hydrogen as an electron donor assisted by solid-phase humin. | Xiao Z, Awata T, Zhang D, Katayama A | J Biosci Bioeng | 10.1016/j.jbiosc.2016.02.002 | 2016 | Acetic Acid/metabolism, Ammonium Compounds/metabolism, Carbon Dioxide/*metabolism, Coculture Techniques, *Denitrification, Electron Transport, *Electrons, Heterotrophic Processes, *Humic Substances, Hydrogen/*metabolism, Nitrates/metabolism, Nitrites/metabolism, Nitrogen/metabolism, Nitrous Oxide/metabolism, Pseudomonas stutzeri/cytology/*metabolism, Veillonellaceae/cytology/*metabolism |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 38224 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5159 | Collection of Institut Pasteur (CIP 107696) | |||
| 46451 | Curators of the CCUG | https://www.ccug.se/strain?id=16156 | Culture Collection University of Gothenburg (CCUG) (CCUG 16156) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |