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Strain identifier

BacDive ID: 137565

Type strain: No

Species: Pseudomonas stutzeri

Strain history: IAM 12931 <-- ATCC 14405 <-- C. E. ZoBell 632.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 38224

BacDive-ID: 137565

keywords: genome sequence, Bacteria, mesophilic

description: Pseudomonas stutzeri CIP 107696 is a mesophilic bacterium of the family Pseudomonadaceae.

NCBI tax id

NCBI tax idMatching level
32042strain
203192species
316species

strain history: IAM 12931 <-- ATCC 14405 <-- C. E. ZoBell 632.

doi: 10.13145/bacdive137565.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 38224

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.534
6948099.613negative

Culture and growth conditions

culture medium

  • @ref: 38224
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
38224positivegrowth25mesophilic
46451positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.721

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 85.366

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri ATCC 14405GCA_015291885completencbi316
66792Pseudomonas stutzeri ATCC 14405 = CCUG 16156 CCUG 16156GCA_000237885contigncbi32042
66792Pseudomonas stutzeri ATCC 14405 = CCUG 1615632042.3wgspatric32042
66792Pseudomonas stutzeri strain ATCC 14405316.569completepatric316
66792Pseudomonas stutzeri ZoBell 632, ATCC 144052529293194draftimg32042
66792Staphylococcus aureus BSAC2827GCA_900043565scaffoldpatric1280
66792Staphylococcus aureus BSAC1818GCA_900044095contigpatric1280

External links

@ref: 38224

culture collection no.: CIP 107696, CCUG 16156, ATCC 14405, LMG 2243, NCIMB 568, JCM 20778, IAM 12931

straininfo link

@refpassport
20218http://www.straininfo.net/strains/323354
20218http://www.straininfo.net/strains/323353
20218http://www.straininfo.net/strains/18616
20218http://www.straininfo.net/strains/18615
20218http://www.straininfo.net/strains/205241

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology1644760NosR, a membrane-bound regulatory component necessary for expression of nitrous oxide reductase in denitrifying Pseudomonas stutzeri.Cuypers H, Viebrock-Sambale A, Zumft WGJ Bacteriol10.1128/jb.174.16.5332-5339.19921992Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, Base Sequence, Blotting, Northern, Blotting, Western, Cell Membrane/enzymology, DNA, Bacterial, Electrophoresis, Polyacrylamide Gel, *Genes, Regulator, Genetic Complementation Test, Membrane Proteins/genetics/*metabolism, Molecular Sequence Data, Multigene Family, Oxidoreductases/*genetics/metabolism, Plasmids, Pseudomonas/*enzymology/geneticsMetabolism
Metabolism6329753NMR studies of a dihaem cytochrome from Pseudomonas perfectomarinus (ATCC 14405).Moura I, Liu MC, LeGall J, Peck HD Jr, Payne WJ, Xavier AV, Moura JJEur J Biochem10.1111/j.1432-1033.1984.tb08191.x1984Chemical Phenomena, Chemistry, Cytochrome c Group/*metabolism, Heme, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Models, Chemical, Oxidation-Reduction, Pseudomonas/*enzymology, TemperatureEnzymology
Metabolism6833178Comparison of cytochromes from anaerobically and aerobically grown cells of Pseudomonas perfectomarinus.Liu MC, Payne WJ, Peck HD Jr, LeGall JJ Bacteriol10.1128/jb.154.1.278-286.19831983Aerobiosis, Anaerobiosis, Cell Membrane/metabolism, Cytochromes/*analysis, Pseudomonas/*metabolism, Spectrophotometry
Genetics7811935Solution conformation of cytochrome c-551 from Pseudomonas stutzeri ZoBell determined by NMR.Cai M, Timkovich RBiophys J10.1016/S0006-3495(94)80590-91994Amino Acid Sequence, *Bacterial Proteins, Biophysical Phenomena, Biophysics, Cytochrome c Group/*chemistry/genetics, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Molecular Structure, Protein Conformation, Protein Folding, Pseudomonas/*chemistry/genetics, Solutions, ThermodynamicsProteome
Enzymology8245846Antibody and DNA probes for detection of nitrite reductase in seawater.Ward BB, Cockcroft AR, Kilpatrick KAJ Gen Microbiol10.1099/00221287-139-9-22851993Antibodies, Bacterial, Base Sequence, DNA Probes/genetics, DNA, Bacterial/analysis/genetics, Genes, Bacterial, Molecular Sequence Data, Nitrite Reductases/*analysis/genetics/immunology, Pseudomonas/*enzymology/genetics/isolation & purification, Seawater/*analysis, Species Specificity, *Water MicrobiologyPhylogeny
Phylogeny857349616S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov.Bennasar A, Rossello-Mora R, Lalucat J, Moore ERInt J Syst Bacteriol10.1099/00207713-46-1-2001996Base Sequence, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Pseudomonas/*classification/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*geneticsGenetics
Genetics8950369Sequence analysis of an internal 9.72-kb segment from the 30-kb denitrification gene cluster of Pseudomonas stutzeri.Glockner AB, Zumft WGBiochim Biophys Acta10.1016/s0005-2728(96)00108-91996Amino Acid Sequence, *Genes, Bacterial, Molecular Sequence Data, *Multigene Family, Nitrogen Fixation/genetics, Open Reading Frames, Pseudomonas/*genetics, Restriction MappingTranscriptome
Metabolism10368138Nitrate and nitrite control of respiratory nitrate reduction in denitrifying Pseudomonas stutzeri by a two-component regulatory system homologous to NarXL of Escherichia coli.Hartig E, Schiek U, Vollack KU, Zumft WGJ Bacteriol10.1128/JB.181.12.3658-3665.19991999Amino Acid Sequence, *Anion Transport Proteins, Bacterial Proteins/chemistry/*genetics/*metabolism, Base Sequence, Carrier Proteins/genetics/*metabolism, Cloning, Molecular, DNA-Binding Proteins/chemistry/*genetics/metabolism, Escherichia coli/*metabolism, *Escherichia coli Proteins, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Nitrate Reductase, Nitrate Reductases/genetics/*metabolism, Nitrate Transporters, Nitrates/*metabolism, Nitrites/*metabolism, Oxidation-Reduction, Oxygen Consumption, Protein Kinases/chemistry/*genetics/metabolism, Pseudomonas/*genetics/*metabolism, Recombinant Proteins/metabolism, Restriction Mapping, Sequence Alignment, Sequence Homology, Amino Acid, Transcription, Genetic, Transcriptional ActivationEnzymology
Pathogenicity10540232Comparative responses of Pseudomonas stutzeri and Pseudomonas aeruginosa to antibacterial agents.Tattawasart U, Maillard JY, Furr JR, Russell ADJ Appl Microbiol10.1046/j.1365-2672.1999.00811.x1999Anti-Bacterial Agents/*pharmacology, Microbial Sensitivity Tests, Pseudomonas/*drug effects, Pseudomonas aeruginosa/*drug effects, Species SpecificityPhylogeny
Enzymology10691974Structural investigations of the CuA centre of nitrous oxide reductase from Pseudomonas stutzeri by site-directed mutagenesis and X-ray absorption spectroscopy.Charnock JM, Dreusch A, Korner H, Neese F, Nelson J, Kannt A, Michel H, Garner CD, Kroneck PM, Zumft WGEur J Biochem10.1046/j.1432-1327.2000.01131.x2000Amino Acid Sequence, Base Sequence, Binding Sites, Copper/*chemistry, DNA Primers, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Oxidoreductases/*chemistry/genetics, Protein Conformation, Pseudomonas/*enzymology, Sequence Homology, Amino Acid, Spectrum AnalysisGenetics
Metabolism15743947Functional domains of NosR, a novel transmembrane iron-sulfur flavoprotein necessary for nitrous oxide respiration.Wunsch P, Zumft WGJ Bacteriol10.1128/JB.187.6.1992-2001.20052005Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/*metabolism, Catalytic Domain, Energy Metabolism, Flavoproteins/chemistry/genetics/metabolism, Gene Expression Regulation, Bacterial, Iron-Sulfur Proteins/chemistry/genetics/metabolism, Membrane Proteins/*chemistry/genetics/*metabolism, Molecular Sequence Data, Mutagenesis, Nitrous Oxide/*metabolism, Protein Structure, Tertiary, Pseudomonas stutzeri/genetics/*metabolism, Recombinant Proteins/chemistry/genetics/metabolismGenetics
Genetics22328767Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies.Pena A, Busquets A, Gomila M, Bosch R, Nogales B, Garcia-Valdes E, Lalucat J, Bennasar AJ Bacteriol10.1128/JB.06648-112012DNA, Bacterial/*chemistry/*genetics, Denitrification, *Genome, Bacterial, Molecular Sequence Data, Pseudomonas stutzeri/*genetics/*isolation & purification/metabolism, Seawater/*microbiology, Sequence Analysis, DNATranscriptome
24189920Immunofluorescence detection of the denitrifying strain Pseudomonas stutzeri (ATCC 14405) in seawater and intertidal sediment environments.Ward BB, Cockcroft ARMicrob Ecol10.1007/BF001718901993
Metabolism26905325Enhanced denitrification of Pseudomonas stutzeri by a bioelectrochemical system assisted with solid-phase humin.Xiao Z, Awata T, Zhang D, Zhang C, Li Z, Katayama AJ Biosci Bioeng10.1016/j.jbiosc.2015.11.0042016*Denitrification, Electricity, Electrochemical Techniques, Electrodes, Electron Transport, Electrons, *Humic Substances, Nitrates/chemistry/metabolism, Nitrogen/chemistry/metabolism, Oxidation-Reduction, Pseudomonas stutzeri/*metabolism
Metabolism26975755Denitrification by Pseudomonas stutzeri coupled with CO2 reduction by Sporomusa ovata with hydrogen as an electron donor assisted by solid-phase humin.Xiao Z, Awata T, Zhang D, Katayama AJ Biosci Bioeng10.1016/j.jbiosc.2016.02.0022016Acetic Acid/metabolism, Ammonium Compounds/metabolism, Carbon Dioxide/*metabolism, Coculture Techniques, *Denitrification, Electron Transport, *Electrons, Heterotrophic Processes, *Humic Substances, Hydrogen/*metabolism, Nitrates/metabolism, Nitrites/metabolism, Nitrogen/metabolism, Nitrous Oxide/metabolism, Pseudomonas stutzeri/cytology/*metabolism, Veillonellaceae/cytology/*metabolism

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
38224Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5159 Collection of Institut Pasteur (CIP 107696)
46451Curators of the CCUGhttps://www.ccug.se/strain?id=16156Culture Collection University of Gothenburg (CCUG) (CCUG 16156)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes