Strain identifier
BacDive ID: 137468
Type strain: 
Species: Streptococcus pyogenes
Strain Designation: Small
Strain history: CIP <- 1956, R. Wahl: strain A28 t28, Streptococcus pyogenes <- 1950, Williams, Public Hlth. Lab., Colindale, London, UK: strain Small <- Griffith
NCBI tax ID(s): 1314 (species)
version 8.1 (current version)
General
@ref: 38001
BacDive-ID: 137468
keywords: genome sequence, Bacteria, mesophilic
description: Streptococcus pyogenes Small is a mesophilic bacterium that was isolated from Human tonsillitis.
NCBI tax id
- NCBI tax id: 1314
- Matching level: species
strain history
- @ref: 38001
- history: CIP <- 1956, R. Wahl: strain A28 t28, Streptococcus pyogenes <- 1950, Williams, Public Hlth. Lab., Colindale, London, UK: strain Small <- Griffith
doi: 10.13145/bacdive137468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pyogenes
- full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)
@ref: 38001
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pyogenes
strain designation: Small
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.943 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 38001 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
| 38001 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
- @ref: 38001
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.981 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | isolation date |
|---|---|---|
| 45809 | Human tonsillitis | |
| 38001 | Tonsillitis | 1936 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Organ | #Lymph node |
| #Host | #Human | |
| #Infection | #Inflammation |
Safety information
risk assessment
- @ref: 38001
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pyogenes NCTC8308 | GCA_900459785 | contig | ncbi | 1314 |
| 66792 | Streptococcus pyogenes strain NCTC8308 | 1314.804 | wgs | patric | 1314 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 96.091 | no |
| gram-positive | yes | 93.982 | no |
| anaerobic | no | 97.012 | no |
| halophile | yes | 85.7 | no |
| spore-forming | no | 95.818 | no |
| glucose-util | yes | 88.484 | no |
| flagellated | no | 98.585 | no |
| aerobic | no | 94.536 | no |
| glucose-ferment | yes | 81.328 | no |
| thermophile | no | 98.741 | no |
External links
@ref: 38001
culture collection no.: CIP 56.65, IMET 3082, NCTC 8308, CCUG 12728
straininfo link
- @ref: 94352
- straininfo: 57975
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 38001 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.65 | Collection of Institut Pasteur (CIP 56.65) | |
| 45809 | Curators of the CCUG | https://www.ccug.se/strain?id=12728 | Culture Collection University of Gothenburg (CCUG) (CCUG 12728) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 94352 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57975.1 |