Strain identifier

BacDive ID: 137465

Type strain: No

Species: Streptococcus pyogenes

Strain Designation: J 17 C

Strain history: CIP <- 1956, R. Wahl: strain A20 t18, Streptococcus pyogenes, Lancefield's Group A Type 18 <- Williams, Public Hlth. Lab., Colindale, london, UK <- R. Lancefield, Rockfeller Inst. Med. Res., USA: strain J 17 C

NCBI tax ID(s): 1314 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 9.1 (current version)

General

@ref: 37998

BacDive-ID: 137465

keywords: genome sequence, Bacteria, facultative anaerobe, Gram-positive, coccus-shaped

description: Streptococcus pyogenes J 17 C is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from Human, Throat.

NCBI tax id

  • NCBI tax id: 1314
  • Matching level: species

strain history

  • @ref: 37998
  • history: CIP <- 1956, R. Wahl: strain A20 t18, Streptococcus pyogenes, Lancefield's Group A Type 18 <- Williams, Public Hlth. Lab., Colindale, london, UK <- R. Lancefield, Rockfeller Inst. Med. Res., USA: strain J 17 C

doi: 10.13145/bacdive137465.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pyogenes
  • full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)

@ref: 37998

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pyogenes

strain designation: J 17 C

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93
37998nopositivecoccus-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37998MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
37998CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

  • @ref: 37998
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 37998
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin-builds acid from4853
68371N-acetylglucosamine+builds acid from59640
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
37998nitrate-reduction17632
37998nitrite-reduction16301

metabolite production

  • @ref: 37998
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
37998oxidase-
37998catalase-1.11.1.6
37998urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37998-+---++---++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37998---------+/-+++------+/-+/-++/-+/--++++-++---+/-------------+/-

Isolation, sampling and environmental information

isolation

  • @ref: 37998
  • sample type: Human, Throat
  • isolation date: 1931

Safety information

risk assessment

  • @ref: 37998
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus pyogenes NCTC8320GCA_900475485completencbi1314
66792Streptococcus pyogenes strain NCTC83201314.753completepatric1314
66792Streptococcus pyogenes NCTC 83202925803923completeimg1314

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes85.892no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no92.314yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.941yes
69480spore-formingspore-formingAbility to form endo- or exosporesno87.467no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.913yes
69480flagellatedmotile2+Ability to perform flagellated movementno93no

External links

@ref: 37998

culture collection no.: CIP 56.57, ATCC 12357, IMET 3060, NCTC 8320, CCUG 12718

straininfo link

  • @ref: 94350
  • straininfo: 35547

literature

  • topic: Enzymology
  • Pubmed-ID: 8746458
  • title: Cloning and sequencing of the streptokinase gene from streptococcus pyogenes (CIP 56.57).
  • authors: Ball MM, Puig J, Iborra F
  • journal: DNA Seq
  • DOI: 10.3109/10425179509074696
  • year: 1995
  • mesh: Amino Acid Sequence, Base Sequence, Cloning, Molecular, Gene Library, Molecular Sequence Data, Streptococcus pyogenes/*genetics, Streptokinase/*genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37998Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.57Collection of Institut Pasteur (CIP 56.57)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94350Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35547.1