Strain identifier
BacDive ID: 13740
Type strain: 
Species: Rhodovulum euryhalinum
Strain Designation: KA-65
Strain history: <- J. Imhoff <- Gorlenko <- Kompantseva, strain KA-65
NCBI tax ID(s): 35805 (species)
version 8.1 (current version)
General
@ref: 1857
BacDive-ID: 13740
DSM-Number: 4868
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Rhodovulum euryhalinum KA-65 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from shallow saline waters.
NCBI tax id
- NCBI tax id: 35805
- Matching level: species
strain history
- @ref: 1857
- history: <- J. Imhoff <- Gorlenko <- Kompantseva, strain KA-65
doi: 10.13145/bacdive13740.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Rhodovulum
- species: Rhodovulum euryhalinum
- full scientific name: Rhodovulum euryhalinum (Kompantseva 1989) Hiraishi and Ueda 1994
synonyms
- @ref: 20215
- synonym: Rhodobacter euryhalinus
@ref: 1857
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Rhodovulum
species: Rhodovulum euryhalinum
full scientific name: Rhodovulum euryhalinum (Kompantseva 1989) Hiraishi and Ueda 1994
strain designation: KA-65
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 1857
- name: PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)
- growth: yes
- link: https://mediadive.dsmz.de/medium/28
- composition: Name: PFENNIG'S MEDIUM I (DSMZ Medium 28; with strain-specific modifications) Composition: NaCl 30.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Ammonium chloride 0.349999 g/l KCl 0.349999 g/l KH2PO4 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Yeast extract 0.25 g/l Ammonium acetate 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Dextrose 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 1857
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1857
- oxygen tolerance: anaerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.984
Isolation, sampling and environmental information
isolation
- @ref: 1857
- sample type: shallow saline waters
- country: USSR
- continent: Asia
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_65942.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_15318;97_22412;98_46540;99_65942&stattab=map
- Last taxonomy: Rhodovulum euryhalinum subclade
- 16S sequence: D16426
- Sequence Identity:
- Total samples: 58
- soil counts: 9
- aquatic counts: 45
- animal counts: 4
Safety information
risk assessment
- @ref: 1857
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodovulum euryhalinum 16S rRNA | D13479 | 1351 | ena | 35805 |
| 20218 | Rhodovulum euryhalinum gene for 16S rRNA | D16426 | 1388 | ena | 35805 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodovulum euryhalinum DSM 4868 | GCA_004342445 | scaffold | ncbi | 35805 |
| 66792 | Rhodovulum euryhalinum strain DSM 4868 | 35805.3 | wgs | patric | 35805 |
| 66792 | Rhodovulum euryhalinum DSM 4868 | 2795385447 | draft | img | 35805 |
GC content
- @ref: 1857
- GC-content: 66.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 66 | no |
| motile | yes | 74.861 | no |
| flagellated | no | 71.103 | no |
| gram-positive | no | 98.922 | no |
| anaerobic | yes | 52.813 | no |
| aerobic | no | 88.719 | yes |
| halophile | yes | 59.367 | no |
| spore-forming | no | 94.168 | no |
| glucose-util | yes | 78.086 | no |
| thermophile | no | 92.767 | yes |
| glucose-ferment | no | 88.05 | no |
External links
@ref: 1857
culture collection no.: DSM 4868
straininfo link
- @ref: 82922
- straininfo: 47881
literature
- Pubmed-ID: 33711868
- title: Dimethyl sulphoxide reduction with reduced sulphur compounds as electron donors by anoxygenic phototrophic bacteria.
- authors: Vogt C, Rabenstein A, Rethmeier J, Fischer U
- journal: Microbiology (Reading)
- DOI: 10.1099/00221287-143-3-767
- year: 1997
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1857 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4868) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4868 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 82922 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47881.1 | StrainInfo: A central database for resolving microbial strain identifiers |