Strain identifier

BacDive ID: 137369

Type strain: Yes

Species: Aquibacillus koreensis

Strain Designation: BH30097

Strain history: CIP <- 2006, JCM <- 2004, J.S. Lee, KRIBB, Daejon, Korea: strain BH30097

NCBI tax ID(s): 279446 (species)

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General

@ref: 37457

BacDive-ID: 137369

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, rod-shaped

description: Aquibacillus koreensis BH30097 is an aerobe, mesophilic, motile bacterium of the family Bacillaceae.

NCBI tax id

  • NCBI tax id: 279446
  • Matching level: species

strain history

@refhistory
67770J.-S. Lee BH30097.
67771<- CJ Kim, KRIBB
37457CIP <- 2006, JCM <- 2004, J.S. Lee, KRIBB, Daejon, Korea: strain BH30097

doi: 10.13145/bacdive137369.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Aquibacillus
  • species: Aquibacillus koreensis
  • full scientific name: Aquibacillus koreensis (Lee et al. 2006) Amoozegar et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Virgibacillus koreensis

@ref: 37457

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Aquibacillus

species: Aquibacillus koreensis

strain designation: BH30097

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stain
67771rod-shapedyesperitrichous
67771positive
37457rod-shapedyespositive

colony morphology

  • @ref: 37457

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37457Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
37457CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
37457positivegrowth25mesophilic
67770positivegrowth30mesophilic
67771positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
67771aerobe
37457obligate aerobe

observation

@refobservation
67770quinones: MK-7
67771quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside+builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
37457nitrate+reduction17632
37457nitrite-reduction16301

metabolite production

  • @ref: 37457
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
37457oxidase+
37457alcohol dehydrogenase-1.1.1.1
37457catalase+1.11.1.6
37457lysine decarboxylase-4.1.1.18
37457ornithine decarboxylase-4.1.1.17
37457urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37457-+++--------++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37457+--+-+--++/-++----------+-++++++/-++---+--+-+/--------+/-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
37457Yellow seaRepublic of KoreaKORAsia
67770Republic of KoreaKORAsiaSalt field near Taean-Gun on the Yellow Sea
67771the Yellow SeaRepublic of KoreaKORAsiaFrom salt field near Taean-Gun
37457Yellow seaRepublic of KoreaKORAsiaEnvironment, Salt field

taxonmaps

  • @ref: 69479
  • File name: preview.99_11960.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_6058;97_7283;98_8987;99_11960&stattab=map
  • Last taxonomy: Aquibacillus koreensis subclade
  • 16S sequence: AY616012
  • Sequence Identity:
  • Total samples: 163
  • soil counts: 131
  • aquatic counts: 18
  • animal counts: 8
  • plant counts: 6

Safety information

risk assessment

  • @ref: 37457
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67771
  • description: Virgibacillus koreensis strain BH30097 16S ribosomal RNA gene, partial sequence
  • accession: AY616012
  • length: 1435
  • database: ena
  • NCBI tax ID: 279446

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquibacillus koreensis JCM 12387GCA_025154055contigncbi279446
66792Aquibacillus koreensis JCM 12387GCA_028416535scaffoldncbi279446

GC content

@refGC-contentmethod
6777041high performance liquid chromatography (HPLC)
6777141.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.507yes
flagellatedyes92.416yes
gram-positiveyes94.105no
anaerobicno98.503no
aerobicyes92.065yes
halophileyes87.831no
spore-formingyes93.269no
glucose-fermentno85.346no
thermophileno99.531yes
glucose-utilyes89.203no

External links

@ref: 37457

culture collection no.: CIP 109159, JCM 12387, KCTC 3823, IBRC M 10657, IBRC-M 10657

straininfo link

  • @ref: 94289
  • straininfo: 289870

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16403894Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions.Lee JS, Lim JM, Lee KC, Lee JC, Park YH, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.63734-02006Cyanoacrylates, Fatty Acids, Gram-Positive Endospore-Forming Bacteria/chemistry/*classification/isolation & purification/physiology, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Species Specificity, TemperatureGenetics
Phylogeny22622623Virgibacillus albus sp. nov., a novel moderately halophilic bacterium isolated from Lop Nur salt lake in Xinjiang province, China.Zhang YJ, Zhou Y, Ja M, Shi R, Chun-Yu WX, Yang LL, Tang SK, Li WJAntonie Van Leeuwenhoek10.1007/s10482-012-9750-y2012Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Virgibacillus/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysisGenetics
Phylogeny25062698Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov.Amoozegar MA, Bagheri M, Didari M, Mehrshad M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.065375-02014Bacillaceae/classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Iran, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Spores, Bacterial/genetics, Virgibacillus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, Water MicrobiologyGenetics
Phylogeny25465850Aquibacillus salifodinae sp. nov., a novel bacterium isolated from a salt mine in Xinjiang province, China.Zhang WY, Hu J, Zhang XQ, Zhu XF, Wu MAntonie Van Leeuwenhoek10.1007/s10482-014-0335-92014Aerobiosis, Bacillaceae/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, *Environmental Microbiology, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny31339480Aquibacillus sediminis sp. nov., a moderately halophilic bacterium isolated from saltern soil.Lee JC, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0035992019Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34617881Aquibacillus kalidii sp. nov., an indole acetic acid-producing endophyte from a shoot of Kalidium cuspidatum, and reclassification of Virgibacillus campisalis Lee et al. 2012 as a later heterotypic synonym of Virgibacillus alimentarius Kim et al. 2011.Wang HT, Xu L, Sun JQInt J Syst Evol Microbiol10.1099/ijsem.0.0050302021Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Endophytes/classification/isolation & purification, Fatty Acids/chemistry, Indoleacetic Acids, Mongolia, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Virgibacillus/*classificationEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37457Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109159Collection of Institut Pasteur (CIP 109159)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
94289Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID289870.1