Strain identifier

BacDive ID: 137366

Type strain: Yes

Species: Marinomonas aquimarina

Strain Designation: 11SM4

Strain history: CIP <- 2004, M.J. Pujalte, Burjassot, Spain: strain 11SM4

NCBI tax ID(s): 295068 (species)

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General

@ref: 37430

BacDive-ID: 137366

keywords: genome sequence, Bacteria, mesophilic, motile

description: Marinomonas aquimarina 11SM4 is a mesophilic, motile bacterium of the family Oceanospirillaceae.

NCBI tax id

  • NCBI tax id: 295068
  • Matching level: species

strain history

@refhistory
374302004, M.J. Pujalte, Burjassot, Spain: strain 11SM4
37430CIP <- 2004, M.J. Pujalte, Burjassot, Spain: strain 11SM4

doi: 10.13145/bacdive137366.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas aquimarina
  • full scientific name: Marinomonas aquimarina corrig. Macián et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Marinomonas aquamarina

@ref: 37430

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas aquimarina

strain designation: 11SM4

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.979
6948099.997negative
37430nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37430Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
37430CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
37430positivegrowth25mesophilic
37430positivegrowth15-37
37430nogrowth5psychrophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
37430NaClpositivegrowth2-10 %
37430NaClnogrowth0 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
37430citrate-carbon source16947
37430esculin-hydrolysis4853
37430glucose-fermentation17234
37430lactose-fermentation17716
37430nitrate-reduction17632
37430nitrite-reduction16301
37430sodium thiosulfate-builds gas from132112
37430nitrate+respiration17632

metabolite production

  • @ref: 37430
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3743015688acetoin-
3743017234glucose-

enzymes

@refvalueactivityec
37430oxidase+
37430beta-galactosidase-3.2.1.23
37430alcohol dehydrogenase-1.1.1.1
37430gelatinase+/-
37430amylase-
37430caseinase-3.4.21.50
37430catalase+1.11.1.6
37430tween esterase-
37430gamma-glutamyltransferase-2.3.2.2
37430lysine decarboxylase-4.1.1.18
37430ornithine decarboxylase-4.1.1.17
37430phenylalanine ammonia-lyase-4.3.1.24
37430tryptophan deaminase-
37430urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37430-++--+---------+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37430-----+----++-------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
37430ValenciaSpainESPEurope
37430ValenciaSpainESPEuropeEnvironment, Sea water1989

Safety information

risk assessment

  • @ref: 37430
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinomonas aquimarina CECT 5080GCA_900089755contigncbi295068
66792Marinomonas aquimarina strain CECT 5080295068.7wgspatric295068

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno99.036no
anaerobicno95.987no
halophileyes79.422no
spore-formingno95.708no
glucose-utilyes86.142no
motileyes94.441no
flagellatedyes96.162no
thermophileno99.534yes
aerobicyes89.17no
glucose-fermentno88.662no

External links

@ref: 37430

culture collection no.: CIP 108405, CECT 5080, CCUG 49439

straininfo link

  • @ref: 94287
  • straininfo: 138988

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15830807Marinomonas aquamarina sp. nov., isolated from oysters and seawater.Macian MC, Arahal DR, Garay E, Pujalte MJSyst Appl Microbiol10.1016/j.syapm.2004.12.0032005Animals, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Mediterranean Sea, Molecular Sequence Data, Nucleic Acid Hybridization, Ostreidae/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, SpainGenetics
Phylogeny19060051Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand.Chang HW, Roh SW, Kim KH, Nam YD, Yoon JH, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65724-02008Fatty Acids/analysis, Marine Biology, Marinomonas/chemistry/*classification/genetics/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Silicon Dioxide, Species SpecificityGenetics
Phylogeny27199280Marinomonas gallaica sp. nov. and Marinomonas atlantica sp. nov., isolated from reared clams (Ruditapes decussatus).Lasa A, Pichon P, Dieguez AL, Romalde JLInt J Syst Evol Microbiol10.1099/ijsem.0.0011702016Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinomonas/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SpainTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37430Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108405Collection of Institut Pasteur (CIP 108405)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94287Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID138988.1