Strain identifier

BacDive ID: 137302

Type strain: No

Species: Kineosporia rhizophila

Strain Designation: I-468

Strain history: CIP <- 1998, JCM <- T. Itoh: strain I-468

NCBI tax ID(s): 84633 (species)

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General

@ref: 37221

BacDive-ID: 137302

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, motile, oval-shaped

description: Kineosporia rhizophila I-468 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Kineosporiaceae.

NCBI tax id

  • NCBI tax id: 84633
  • Matching level: species

strain history

@refhistory
67770T. Itoh I-468.
37221CIP <- 1998, JCM <- T. Itoh: strain I-468

doi: 10.13145/bacdive137302.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kineosporiales
  • family: Kineosporiaceae
  • genus: Kineosporia
  • species: Kineosporia rhizophila
  • full scientific name: Kineosporia rhizophila Kudo et al. 1998

@ref: 37221

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Kineosporiales

family: Kineosporiaceae

genus: Kineosporia

species: Kineosporia rhizophila

strain designation: I-468

type strain: no

Morphology

cell morphology

  • @ref: 37221
  • gram stain: positive
  • cell shape: oval-shaped
  • motility: yes

colony morphology

  • @ref: 37221

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37221MEDIUM 122 - for StreptomycesyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (2.000 g);Starch maize (10.000 g)
37221CIP Medium 122yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=122

culture temp

@refgrowthtypetemperaturerange
37221positivegrowth30mesophilic
67770positivegrowth28mesophilic
37221positivegrowth30-37mesophilic
37221nogrowth10psychrophilic
37221nogrowth41thermophilic
37221nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 37221
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
37221NaClpositivegrowth0-2 %
37221NaClnogrowth4 %
37221NaClnogrowth6 %
37221NaClnogrowth8 %
37221NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
37221citrate-carbon source16947
37221esculin+hydrolysis4853
37221hippurate-hydrolysis606565
37221nitrate+reduction17632
37221nitrite-reduction16301
37221nitrate-respiration17632

metabolite production

  • @ref: 37221
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3722115688acetoin-
3722117234glucose-

enzymes

@refvalueactivityec
37221oxidase-
37221beta-galactosidase+3.2.1.23
37221alcohol dehydrogenase-1.1.1.1
37221gelatinase+/-
37221amylase-
37221DNase-
37221caseinase-3.4.21.50
37221catalase+1.11.1.6
37221tween esterase+
37221gamma-glutamyltransferase+2.3.2.2
37221lecithinase-
37221lipase-
37221lysine decarboxylase-4.1.1.18
37221ornithine decarboxylase-4.1.1.17
37221phenylalanine ammonia-lyase-4.3.1.24
37221tryptophan deaminase-
37221urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37221-+-+-+-----+-+-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37221+--+++---++++-+-------++++++/-+/-+/-+--+/--+/-+/--+/-+----+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
37221Mt Mikuni in GummaJapanJPNAsia
67770Mt. Mikuni, Gunma Pref.JapanJPNAsiaSphagnum
37221Mount Mikuni, GunmaJapanJPNAsiaSphagnum

Safety information

risk assessment

  • @ref: 37221
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

GC content

  • @ref: 67770
  • GC-content: 70.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 37221

culture collection no.: CIP 105756, JCM 9962

straininfo link

  • @ref: 94237
  • straininfo: 66062

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37221Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105756Collection of Institut Pasteur (CIP 105756)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94237Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID66062.1