Strain identifier

BacDive ID: 137225

Type strain: No

Species: Empedobacter brevis

Strain history: CIP <- 1981, Diaconesses Hosp., Paris, France

NCBI tax ID(s): 247 (species)

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General

@ref: 37110

BacDive-ID: 137225

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Empedobacter brevis CIP 103046 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Weeksellaceae.

NCBI tax id

  • NCBI tax id: 247
  • Matching level: species

strain history

@refhistory
371101981, Diaconesses Hosp., Paris, France
37110CIP <- 1981, Diaconesses Hosp., Paris, France

doi: 10.13145/bacdive137225.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter brevis
  • full scientific name: Empedobacter brevis (Holmes and Owen 1982 ex Lustig 1890) Vandamme et al. 1994

  • synonyms

    @refsynonym
    20215Flavobacterium brevis
    20215Flavobacterium breve

@ref: 37110

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Empedobacter

species: Empedobacter brevis

type strain: no

Morphology

cell morphology

  • @ref: 37110
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37110MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
37110CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 37110
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 37110
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3711017632nitrate+reduction
3711016301nitrite+reduction

metabolite production

  • @ref: 37110
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
37110oxidase+
37110catalase+1.11.1.6
37110urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37110-+++-+++++++---+-+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
37110ParisFranceFRAEurope
37110ParisFranceFRAEuropeHuman, Vaginal

Safety information

risk assessment

  • @ref: 37110
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 37110

culture collection no.: CIP 103046

straininfo link

  • @ref: 94173
  • straininfo: 395691

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37110Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103046Collection of Institut Pasteur (CIP 103046)
68382Automatically annotated from API zym
94173Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID395691.1