Strain identifier

BacDive ID: 13720

Type strain: Yes

Species: Paracoccus seriniphilus

Strain Designation: LS-1, MBT-A4

Strain history: <- R. Pukall; MBT-A4 <- M. Laroche

NCBI tax ID(s): 184748 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5564

BacDive-ID: 13720

DSM-Number: 14827

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Paracoccus seriniphilus LS-1 is a mesophilic bacterium that was isolated from Bugula plumosa .

NCBI tax id

  • NCBI tax id: 184748
  • Matching level: species

strain history: <- R. Pukall; MBT-A4 <- M. Laroche

doi: 10.13145/bacdive13720.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Paracoccus
  • species: Paracoccus seriniphilus
  • full scientific name: Paracoccus seriniphilus Pukall et al. 2003

@ref: 5564

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus seriniphilus

full scientific name: Paracoccus seriniphilus Pukall et al. 2003

strain designation: LS-1, MBT-A4

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5564BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://bacmedia.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40708Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
5564positivegrowth28mesophilic
40708positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5564
  • sample type: Bugula plumosa (Bryozoa)
  • host species: Bugula plumosa;Bryozoa
  • geographic location: Helgoland
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Moss

Safety information

risk assessment

  • @ref: 5564
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5564
  • description: Paracoccus seriniphilus partial 16S rRNA gene, strain MBT-A4
  • accession: AJ428275
  • length: 1416
  • database: ena
  • NCBI tax ID: 184748

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paracoccus seriniphilus DSM 14827GCA_900199195contigncbi184748
66792Paracoccus seriniphilus strain DSM 14827184748.24wgspatric184748
66792Paracoccus seriniphilus DSM 14827 (v2)2737471638draftimg184748

GC content

  • @ref: 5564
  • GC-content: 63.3

External links

@ref: 5564

culture collection no.: DSM 14827

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/303373

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12710610Paracoccus seriniphilus sp. nov., an L-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa.Pukall R, Laroche M, Kroppenstedt RM, Schumann P, Stackebrandt E, Ulber RInt J Syst Evol Microbiol10.1099/ijs.0.02352-02003Animals, Base Sequence, Bryozoa/*microbiology, L-Serine Dehydratase/*biosynthesis, Marine Biology, Molecular Sequence Data, Paracoccus/*classification/enzymology/genetics/ultrastructure, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Seawater/*microbiology, Serine/*metabolismGenetics
Phylogeny19329608Paracoccus aestuarii sp. nov., isolated from tidal flat sediment.Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65759-02009Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny23546859Paracoccus siganidrum sp. nov., isolated from fish gastrointestinal tract.Liu Y, Xie QY, Hong K, Li L, Zhao YM, Tang YL, An JY, Zhu PP, Xu CHAntonie Van Leeuwenhoek10.1007/s10482-013-9894-42013Animals, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fishes/*microbiology, Gastrointestinal Tract/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny28741997Paracoccus hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus).Lin P, Yan ZF, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0019902017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny30737708Paracoccus indicus sp. nov., isolated from surface seawater in the Indian Ocean.Lin D, Zhu S, Chen Y, Huang Y, Yang J, Chen JAntonie Van Leeuwenhoek10.1007/s10482-019-01226-22019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Indian Ocean, Paracoccus/classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5564Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14827)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14827
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40708Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4831
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880