Strain identifier
BacDive ID: 137189
Type strain: 
Species: Haemophilus parahaemolyticus
Strain Designation: A62-71
Strain history: CIP <- 1985, NCTC <- 1971, C.E.E. Vella, London, UK: strain A62-71
NCBI tax ID(s): 735 (species)
version 9.3 (current version)
General
@ref: 37066
BacDive-ID: 137189
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Haemophilus parahaemolyticus A62-71 is a mesophilic, Gram-negative bacterium that was isolated from Human, Throat.
NCBI tax id
- NCBI tax id: 735
- Matching level: species
strain history
- @ref: 37066
- history: CIP <- 1985, NCTC <- 1971, C.E.E. Vella, London, UK: strain A62-71
doi: 10.13145/bacdive137189.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus parahaemolyticus
- full scientific name: Haemophilus parahaemolyticus Pittman 1953 (Approved Lists 1980)
@ref: 37066
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus parahaemolyticus
strain designation: A62-71
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 90.488 | |
| 125438 | 98.978 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 37066 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |
| 37066 | CIP Medium 10 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10 |
culture temp
- @ref: 37066
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 96.7
spore formation
- @ref: 125438
- spore formation: no
- confidence: 93.174
Isolation, sampling and environmental information
isolation
- @ref: 37066
- sample type: Human, Throat
Safety information
risk assessment
- @ref: 37066
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haemophilus parahaemolyticus NCTC10794 | GCA_900450875 | contig | ncbi | 735 |
| 66792 | Haemophilus parahaemolyticus strain NCTC10794 | 735.9 | wgs | patric | 735 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.978 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.602 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.174 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.312 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.488 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 79.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 77.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 68.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 96.7 |
External links
@ref: 37066
culture collection no.: CIP 101263, NCTC 10794
straininfo link
- @ref: 94140
- straininfo: 54512
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 37066 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101263 | Collection of Institut Pasteur (CIP 101263) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 94140 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID54512.1 | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |