Strain identifier

BacDive ID: 13714

Type strain: Yes

Species: Paracoccus aminophilus

Strain Designation: DM-15

Culture col. no.: DSM 8538, ATCC 49673, IAM 14245, JCM 7686

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3239

BacDive-ID: 13714

DSM-Number: 8538

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Paracoccus aminophilus DM-15 is a mesophilic bacterium that was isolated from soil Niigata Factory of Mitsubishi Gas ; Chemical Company.

strain history: <- JCM <- T. Urakami, DM-15

doi: 10.13145/bacdive13714.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Paracoccus
  • species: Paracoccus aminophilus
  • full scientific name: Paracoccus aminophilus Urakami et al. 1990

@ref: 3239

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus aminophilus

full scientific name: Paracoccus aminophilus Urakami et al. 1990

strain designation: DM-15

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3239MEDIUM FOR PARACOCCUS AMINOPHILUS AND P. AMINOVORANS (DSMZ Medium 774)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium774.pdf
34679MEDIUM 199 - for Clavibacter michiganense subsp. insidiosumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (5.000g);Yeast extract (5.000 g);Peptone (5.000 g)

culture temp

@refgrowthtypetemperaturerange
3239positivegrowth30mesophilic
34679positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 3239
  • sample type: soil Niigata Factory of Mitsubishi Gas Chemical Company
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 3239
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
3239Paracoccus aminophilus gene for 16S rRNA, partial sequence, strain: NBRC 16710AB6811111388ena34003
3239Paracoccus aminophilus gene for 16S rRNA, strain: JCM 7686D322391385ena34003
3239Paracoccus aminophilus 16S ribosomal RNA gene, partial sequenceAY0141761458ena34003

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paracoccus aminophilus JCM 7686GCA_000444995completencbi1367847
66792Paracoccus aminophilus JCM 76861367847.12plasmidpatric1367847
66792Paracoccus aminophilus JCM 76861367847.14plasmidpatric1367847
66792Paracoccus aminophilus JCM 76861367847.11plasmidpatric1367847
66792Paracoccus aminophilus JCM 76861367847.3completepatric1367847
66792Paracoccus aminophilus JCM 76861367847.15plasmidpatric1367847
66792Paracoccus aminophilus JCM 76861367847.13plasmidpatric1367847

GC content

  • @ref: 3239
  • GC-content: 62.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 3239

culture collection no.: DSM 8538, ATCC 49673, IAM 14245, JCM 7686

straininfo link

@refpassport
20218http://www.straininfo.net/strains/153680
20218http://www.straininfo.net/strains/114649
20218http://www.straininfo.net/strains/153681
20218http://www.straininfo.net/strains/114650

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3239Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8538)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8538
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34679Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18167
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)