Strain identifier

BacDive ID: 137060

Type strain: No

Species: Serratia marcescens

Strain history: CIP <- 1953, ATCC <- R.S. Breed, New-York Agr. Exp. Stat., USA <- NCTC <- A.J. Kluyver

NCBI tax ID(s): 615 (species)

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General

@ref: 36906

BacDive-ID: 137060

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Serratia marcescens CIP 53.90 is an obligate aerobe, mesophilic, motile bacterium of the family Yersiniaceae.

NCBI tax id

  • NCBI tax id: 615
  • Matching level: species

strain history

  • @ref: 36906
  • history: CIP <- 1953, ATCC <- R.S. Breed, New-York Agr. Exp. Stat., USA <- NCTC <- A.J. Kluyver

doi: 10.13145/bacdive137060.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia marcescens
  • full scientific name: Serratia marcescens Bizio 1823 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Serratia marcescens subsp. sakuensis

@ref: 36906

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Serratia

species: Serratia marcescens

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.368
6948099.941negative
36906yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36906MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36906CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
36906CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 36906
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36906
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.675

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol+builds acid from17113
68371glycerol+builds acid from17754
36906nitrate+reduction17632
36906nitrite-reduction16301

metabolite production

  • @ref: 36906
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36906oxidase-
36906catalase+1.11.1.6
36906urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36906-+---+----++-+--++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
36906++--+--+-++++---+++--+-+++-+--++---+-+--+----++++

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36906DelftNetherlandsNLDEurope
36906DelftNetherlandsNLDEuropeFood, Milk1922

Safety information

risk assessment

  • @ref: 36906
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Serratia marcescens ATCC 274GCA_009936295completencbi615
66792Serratia marcescens strain ATCC 274615.1163completepatric615
66792Serratia marcescens ATCC 274651716783draftimg615

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.417no
flagellatedno56.389no
gram-positiveno98.1no
anaerobicno97.816no
aerobicyes90.036no
halophileno93.786no
spore-formingno94.774no
glucose-utilyes94.153no
thermophileno99.428no
glucose-fermentyes91.211no

External links

@ref: 36906

culture collection no.: CIP 53.90, ATCC 274, ATCC 8412, ATCC 10759, NCDO 740, NCTC 1377, NCIMB 1377

straininfo link

  • @ref: 94038
  • straininfo: 4951

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology6432Kinetic properties of Serratia marcescens adenosine 5'-diphosphate glucose pyrophosphorylase.Preiss J, Crawford K, Downey J, Lammel C, Greenberg EJ Bacteriol10.1128/jb.127.1.193-203.197619761,4-alpha-Glucan Branching Enzyme/metabolism, Adenosine Diphosphate/pharmacology, Adenosine Diphosphate Glucose/metabolism, Adenosine Monophosphate/pharmacology, Adenosine Triphosphate/pharmacology, Cell-Free System, Enzyme Activation, Fructosephosphates/pharmacology, Glucosephosphates/pharmacology, Glycogen Synthase/metabolism, Hydrogen-Ion Concentration, Kinetics, NADP/pharmacology, Nucleotidyltransferases/antagonists & inhibitors/isolation & purification/*metabolism, Phosphoenolpyruvate/pharmacology, Pyridoxal Phosphate/pharmacology, Serratia/enzymology, Serratia marcescens/*enzymologyMetabolism
8302200The role of O-antigen in susceptibility of Serratia marcescens to non-immune serum.Palomar J, Montilla R, Fuste MC, Vinas MMicrobios1993Animals, Antigens, Bacterial/genetics/*immunology, Complement Pathway, Alternative/*physiology, Complement Pathway, Classical/*physiology, Lipopolysaccharides/*immunology, Mutation, Rabbits, Serratia marcescens/*growth & development/*immunology
Metabolism15184576luxS mutants of Serratia defective in autoinducer-2-dependent 'quorum sensing' show strain-dependent impacts on virulence and production of carbapenem and prodigiosin.Coulthurst SJ, Kurz CL, Salmond GPCMicrobiology (Reading)10.1099/mic.0.26946-02004Animals, Bacterial Proteins/genetics/*metabolism, Caenorhabditis elegans/microbiology, Carbapenems/biosynthesis, Carbon-Sulfur Lyases, *Gene Expression Regulation, Bacterial, Homoserine/*analogs & derivatives/*metabolism, Lactones/*metabolism, Molecular Sequence Data, *Mutation, Prodigiosin/biosynthesis, Sequence Analysis, DNA, Serratia/genetics/growth & development/*metabolism/*pathogenicity, Serratia marcescens/genetics/growth & development/metabolism/pathogenicity, Signal Transduction, Species Specificity, VirulenceGenetics
Genetics15528645The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation.Harris AKP, Williamson NR, Slater H, Cox A, Abbasi S, Foulds I, Simonsen HT, Leeper FJ, Salmond GPCMicrobiology (Reading)10.1099/mic.0.27222-02004Bacterial Proteins/genetics, Blotting, Southern, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA-Binding Proteins/genetics, Gene Order, *Genes, Bacterial, *Genetic Variation, Molecular Sequence Data, Multigene Family, Open Reading Frames, Peptide Synthases/genetics, Polyketide Synthases/genetics, Prodigiosin/*biosynthesis, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Serratia/*genetics/*metabolism, Streptomyces coelicolor/geneticsTranscriptome
Metabolism16187093Disruption of the copper efflux pump (CopA) of Serratia marcescens ATCC 274 pleiotropically affects copper sensitivity and production of the tripyrrole secondary metabolite, prodigiosin.Williamson NR, Simonsen HT, Harris AK, Leeper FJ, Salmond GPJ Ind Microbiol Biotechnol10.1007/s10295-005-0040-92005Bacterial Proteins/*genetics/metabolism, Copper/*pharmacology, Culture Media, *Gene Deletion, *Gene Expression Regulation, Bacterial, Prodigiosin/*biosynthesis/chemistry, Serratia marcescens/drug effects/genetics/growth & development/*metabolismCultivation
16349300Buffering Capacity of Pigmented and Nonpigmented Strains of Serratia marcescens.Rius N, Sole M, Francia A, Loren JGAppl Environ Microbiol10.1128/aem.60.6.2152-2154.19941994
Genetics16804166Metabolic and regulatory engineering of Serratia marcescens: mimicking phage-mediated horizontal acquisition of antibiotic biosynthesis and quorum-sensing capacities.Coulthurst SJ, Williamson NR, Harris AKP, Spring DR, Salmond GPCMicrobiology (Reading)10.1099/mic.0.28803-02006Anti-Bacterial Agents/*biosynthesis, Base Sequence, Genetic Engineering, Molecular Sequence Data, Multigene Family, Phenotype, Prodigiosin/*biosynthesis, Serratia marcescens/genetics/*metabolism, *Signal Transduction, VirulencePhenotype
Genetics32273359Complete Genome Sequence of Temperature-Dependent Pigment-Producing Serratia marcescens ATCC 274.Yabe S, Fukushima JMicrobiol Resour Announc10.1128/MRA.00164-202020

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36906Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.90Collection of Institut Pasteur (CIP 53.90)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94038Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID4951.1