Strain identifier
BacDive ID: 137004
Type strain: 
Species: Actinobacillus ureae
Strain history: CIP <- 1962, S.D. Henriksen, State Inst. of Public Health, Oslo, Norway: strain 218/60, Pasteurella haemolytica var. ureae
NCBI tax ID(s): 723 (species)
version 8.1 (current version)
General
@ref: 36825
BacDive-ID: 137004
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Actinobacillus ureae CIP 62.10 is a mesophilic, Gram-negative bacterium of the family Pasteurellaceae.
NCBI tax id
- NCBI tax id: 723
- Matching level: species
strain history
| @ref | history |
|---|---|
| 36825 | 1962, S.D. Henriksen, State Inst. of Public Health, Oslo, Norway: strain 218/60, Pasteurella haemolytica var. ureae |
| 36825 | CIP <- 1962, S.D. Henriksen, State Inst. of Public Health, Oslo, Norway: strain 218/60, Pasteurella haemolytica var. ureae |
doi: 10.13145/bacdive137004.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Actinobacillus
- species: Actinobacillus ureae
- full scientific name: Actinobacillus ureae (Jones 1962) Mutters et al. 1986
synonyms
- @ref: 20215
- synonym: Pasteurella ureae
@ref: 36825
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Actinobacillus
species: Actinobacillus ureae
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.971
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 36825 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
| 36825 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
- @ref: 36825
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|
| 36825 | Norway | NOR | Europe | ||
| 36825 | Norway | NOR | Europe | Human, Rhinosinusitis (child) | 1960 |
Safety information
risk assessment
- @ref: 36825
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinobacillus ureae NCTC10220 | GCA_900445015 | contig | ncbi | 723 |
| 66792 | Actinobacillus ureae strain NCTC10220 | 723.4 | wgs | patric | 723 |
| 66792 | Actinobacillus ureae NCTC 10220 | 2808606670 | draft | img | 723 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.138 | no |
| flagellated | no | 94.593 | no |
| gram-positive | no | 98.271 | no |
| anaerobic | no | 97.763 | no |
| aerobic | no | 86.28 | no |
| halophile | no | 50 | no |
| spore-forming | no | 98.772 | no |
| glucose-util | no | 56.149 | no |
| thermophile | no | 98.988 | yes |
| glucose-ferment | no | 51.849 | no |
External links
@ref: 36825
culture collection no.: CIP 62.10, ATCC 29691, NCTC 10220
straininfo link
- @ref: 93993
- straininfo: 39660
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 36825 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2062.10 | Collection of Institut Pasteur (CIP 62.10) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 93993 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID39660.1 |