Strain identifier

BacDive ID: 136940

Type strain: No

Species: Vibrio crassostreae

Strain history: CIP <- 2004, D. Mazel, Inst. Pasteur, Paris, France: strain LGP 8

NCBI tax ID(s): 246167 (species)

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General

@ref: 36718

BacDive-ID: 136940

keywords: Bacteria, facultative anaerobe, Gram-negative, rod-shaped

description: Vibrio crassostreae CIP 108328 is a facultative anaerobe, Gram-negative, rod-shaped bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 246167
  • Matching level: species

strain history

@refhistory
367182004, D. Mazel, Inst. Pasteur, Paris, France: strain LGP 8
36718CIP <- 2004, D. Mazel, Inst. Pasteur, Paris, France: strain LGP 8

doi: 10.13145/bacdive136940.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio crassostreae
  • full scientific name: Vibrio crassostreae Faury et al. 2004

@ref: 36718

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio crassostreae

type strain: no

Morphology

cell morphology

  • @ref: 36718
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36718Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
36718CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
36718positivegrowth20
36718positivegrowth5-30
36718nogrowth37
36718nogrowth41

Physiology and metabolism

oxygen tolerance

  • @ref: 36718
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
36718NaClpositivegrowth2-6 %
36718NaClnogrowth8 %
36718NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371lactose-builds acid from17716
68371esculin-builds acid from4853
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
36718citrate-carbon source16947
36718esculin+hydrolysis4853
36718glucose+fermentation17234
36718lactose-fermentation17716
36718nitrate+reduction17632
36718nitrite-reduction16301
36718sodium thiosulfate-builds gas from132112

metabolite production

  • @ref: 36718
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3671815688acetoin-
3671817234glucose+

enzymes

@refvalueactivityec
36718oxidase+
36718beta-galactosidase+3.2.1.23
36718alcohol dehydrogenase-1.1.1.1
36718gelatinase+
36718amylase+
36718caseinase+3.4.21.50
36718catalase+1.11.1.6
36718tween esterase+
36718gamma-glutamyltransferase+2.3.2.2
36718lecithinase+
36718lipase+
36718lysine decarboxylase-4.1.1.18
36718ornithine decarboxylase-4.1.1.17
36718phenylalanine ammonia-lyase-4.3.1.24
36718protease+
36718tryptophan deaminase-
36718urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36718-+-+------++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
36718+/----+/-----+/-+/-+/-+/-----+/----+/--+/--+/-+/-+/--+/-+/-+/----+/-+/-------+/---+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36718--+---++------+-+--+----+------+-----------------+----+----++--------------+---++-----+--++++++---+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36718La TrembladeFranceFRAEurope
36718La TrembladeFranceFRAEuropeAnimal, Oyster, hemolymph2004

Safety information

risk assessment

  • @ref: 36718
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36718

culture collection no.: CIP 108328, LMG 22241, LGP 8

straininfo link

  • @ref: 93949
  • straininfo: 277536

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36718Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108328Collection of Institut Pasteur (CIP 108328)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
93949Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID277536.1