Strain identifier

BacDive ID: 136903

Type strain: Yes

Species: Mogibacterium vescum

Strain Designation: D5-2

Strain history: CIP <- 2003 JCM <- 2001, F. Nakazawa: strain D5-2

NCBI tax ID(s): 86333 (species)

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General

@ref: 36645

BacDive-ID: 136903

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Mogibacterium vescum D5-2 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human periodontal pocket.

NCBI tax id

  • NCBI tax id: 86333
  • Matching level: species

strain history

@refhistory
67770F. Nakazawa D5-2.
36645CIP <- 2003 JCM <- 2001, F. Nakazawa: strain D5-2

doi: 10.13145/bacdive136903.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Mogibacteriaceae
  • genus: Mogibacterium
  • species: Mogibacterium vescum
  • full scientific name: Mogibacterium vescum Nakazawa et al. 2000

@ref: 36645

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Eubacteriales, not assigned to family

genus: Mogibacterium

species: Mogibacterium vescum

strain designation: D5-2

type strain: yes

Morphology

cell morphology

  • @ref: 36645
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 36645

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36645MEDIUM 433 - for Atopobium, Clostridium scindens, C. hylemonae, Corpobacillus cateniformis, Catenibacterium mitsuokai, Solobacterium mooreiyesDistilled water make up to (950.000 ml);Agar (15.000 g);Glucose (1.500 g);Yeast extract (5.000 g);Horse blood (50.000 ml);Starch maize (0.500 g);Beef extract(2.400 g);Proteose Peptone N°3 (10.000 g);Di Sodium hydrogen phosphate (4.000 g);L-Cysteine (0.500
36645CIP Medium 433yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=433

culture temp

@refgrowthtypetemperaturerange
36645positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36645
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3664517108D-arabinose-degradation
3664515824D-fructose+degradation
3664517634D-glucose-degradation
3664565327D-xylose-degradation
3664517057cellobiose-degradation
3664517716lactose-degradation
3664517306maltose-degradation
3664517814salicin-degradation
3664517992sucrose-degradation
366454853esculin-hydrolysis
3664517632nitrate+reduction
3664516301nitrite-reduction
3664517632nitrate+respiration

metabolite production

  • @ref: 36645
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
36645oxidase-
36645beta-galactosidase-3.2.1.23
36645gelatinase+/-
36645amylase-
36645DNase-
36645caseinase+3.4.21.50
36645catalase+1.11.1.6
36645tween esterase+
36645lecithinase-
36645lipase-
36645protease-
36645urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36645--++-+----++-++--++-

Isolation, sampling and environmental information

isolation

@refsample type
67770Human periodontal pocket
36645Human, Periodontal pockets

taxonmaps

  • @ref: 69479
  • File name: preview.99_21812.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_145;96_448;97_513;98_16454;99_21812&stattab=map
  • Last taxonomy: Mogibacterium
  • 16S sequence: LC096233
  • Sequence Identity:
  • Total samples: 33927
  • soil counts: 207
  • aquatic counts: 585
  • animal counts: 33004
  • plant counts: 131

Safety information

risk assessment

  • @ref: 36645
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Mogibacterium vescum gene for 16S rRNA, partial sequence, strain:ATCC 700697AB0217021477ena86333
67770Mogibacterium vescum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11203LC0962331455ena86333

GC content

  • @ref: 67770
  • GC-content: 46
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 36645

culture collection no.: CIP 107818, JCM 11203, ATCC 700697

straininfo link

  • @ref: 93922
  • straininfo: 87720

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36645Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107818Collection of Institut Pasteur (CIP 107818)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93922Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID87720.1