Strain identifier

BacDive ID: 136875

Type strain: Yes

Species: Glaciecola punicea

Strain Designation: ICO 67

Strain history: CIP <- 2002, ACAM <- 1998, ACAM <- 1996, G. Bowman <- D. Nichols: strain ICO 67

NCBI tax ID(s): 1121923 (strain), 56804 (species)

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General

@ref: 36584

BacDive-ID: 136875

keywords: genome sequence, Bacteria, psychrophilic, Gram-negative

description: Glaciecola punicea ICO 67 is a psychrophilic, Gram-negative bacterium of the family Alteromonadaceae.

NCBI tax id

NCBI tax idMatching level
56804species
1121923strain

strain history

  • @ref: 36584
  • history: CIP <- 2002, ACAM <- 1998, ACAM <- 1996, G. Bowman <- D. Nichols: strain ICO 67

doi: 10.13145/bacdive136875.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Glaciecola
  • species: Glaciecola punicea
  • full scientific name: Glaciecola punicea Bowman et al. 1998

@ref: 36584

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Glaciecola

species: Glaciecola punicea

strain designation: ICO 67

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.906
36584negativerod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36584Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
36584CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
36584positivegrowth10psychrophilic
36584positivegrowth5-15psychrophilic
36584nogrowth18psychrophilic
36584nogrowth25mesophilic
36584nogrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.993

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
365844853esculin-hydrolysis
3658417632nitrate-reduction
3658416301nitrite-reduction
36584132112sodium thiosulfate-builds gas from

metabolite production

  • @ref: 36584
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 36584
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
36584oxidase+
36584beta-galactosidase-3.2.1.23
36584gelatinase-
36584amylase-
36584caseinase-3.4.21.50
36584catalase+1.11.1.6
36584tween esterase-
36584lecithinase-
36584lipase-
36584lysine decarboxylase-4.1.1.18
36584ornithine decarboxylase-4.1.1.17
36584protease-
36584tryptophan deaminase-
36584urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36584-+++-++-++-+--------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typegeographic locationisolation date
36584AntarcticaATAAntarctica
36584AntarcticaATAAntarcticaEnvironment, Sea iceFrom the O'Gorman Rocks area of Prydz Bay1994

Safety information

risk assessment

  • @ref: 36584
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Glaciecola punicea ACAM 611GCA_000252165contigncbi1121923
66792Glaciecola punicea DSM 14233 = ACAM 6111121923.3wgspatric1121923

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno71.121no
flagellatedno87.09no
gram-positiveno98.537no
anaerobicno98.374no
halophileyes79.77no
spore-formingno96.802no
thermophileno99.562no
glucose-utilyes87.249no
aerobicyes84.777no
glucose-fermentno86.401no

External links

@ref: 36584

culture collection no.: CIP 105817, ACAM 611

straininfo link

  • @ref: 93898
  • straininfo: 44120

literature

Pubmed-IDtitleauthorsjournalDOIyearmeshtopictopic2
10427082Physicochemical parameters for growth of the sea ice bacteria Glaciecola punicea ACAM 611(T) and Gelidibacter sp. strain IC158.Nichols DS, Greenhill AR, Shadbolt CT, Ross T, McMeekin TAAppl Environ Microbiol10.1128/AEM.65.8.3757-3760.19991999Antarctic Regions, Bacteria/*growth & development, Bacteroidetes/*growth & development, Hydrogen-Ion Concentration, Ice, Seawater/microbiology, Sodium Chloride, Temperature
22628500Genome sequence of proteorhodopsin-containing sea ice bacterium Glaciecola punicea ACAM 611T.Qin QL, Xie BB, Shu YL, Rong JC, Zhao DL, Zhang XY, Chen XL, Zhou BC, Zhang YZJ Bacteriol10.1128/JB.00463-122012Alteromonadaceae/*genetics/isolation & purification, DNA, Bacterial/*chemistry/*genetics, *Genome, Bacterial, Ice Cover/microbiology, Molecular Sequence Data, Rhodopsin/*genetics, Rhodopsins, Microbial, Sequence Analysis, DNAGeneticsTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36584Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105817Collection of Institut Pasteur (CIP 105817)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93898Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID44120.1