General

@ref: 6219

BacDive-ID: 13686

DSM-Number: 15983

keywords: 16S sequence, Bacteria, mesophilic

description: Oceanicola granulosus DSM 15983 is a mesophilic bacterium that was isolated from seawater.

NCBI tax id

• NCBI tax id: 252302
• Matching level: species

strain history

• @ref: 6219
• history: <- J.-C. Cho

doi: 10.13145/bacdive13686.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Alphaproteobacteria
• order: Rhodobacterales
• family: Roseobacteraceae
• genus: Oceanicola
• species: Oceanicola granulosus
• full scientific name: Oceanicola granulosus Cho and Giovannoni 2004

@ref: 6219

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Oceanicola

species: Oceanicola granulosus

full scientific name: Oceanicola granulosus Cho and Giovannoni 2004

type strain: no

Culture and growth conditions

culture medium

• @ref: 6219
• name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514
• composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 6219
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 6219
• sample type: seawater
• geographic location: Atlantic Ocean, Sargasso Sea

isolation source categories

• Cat1: #Environmental
• Cat2: #Aquatic
• Cat3: #Marine

taxonmaps

• @ref: 69479
• File name: preview.99_3913.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1998;97_2404;98_2972;99_3913&stattab=map
• Last taxonomy: Oceanicola granulosus subclade
• 16S sequence: AY424897
• Sequence Identity:
• Total samples: 2467
• soil counts: 86
• aquatic counts: 2099
• animal counts: 263
• plant counts: 19

Safety information

risk assessment

• @ref: 6219
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 6219
• description: Oceanicola granulosus strain HTCC2523 16S ribosomal RNA gene, partial sequence
• accession: AY424897
• length: 1423
• database: ena
• NCBI tax ID: 252302

External links

@ref: 6219

culture collection no.: DSM 15983, HTCC 2523

straininfo link

• @ref: 82869
• straininfo: 127231

literature

• topic: Phylogeny
• Pubmed-ID: 15280281
• title: Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'.
• authors: Cho JC, Giovannoni SJ
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.03015-0
• year: 2004
• mesh: Acids/metabolism, Amino Acids/metabolism, Atlantic Ocean, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cytoplasmic Granules/chemistry, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Hydroxybutyrates/*metabolism, Microbial Sensitivity Tests, Molecular Sequence Data, Movement, Phenazines, Phylogeny, Polyesters/*metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/cytology/isolation & purification/physiology, Seawater/microbiology, Sequence Analysis, DNA, Sequence Homology, Water Microbiology
• topic2: Metabolism

Reference