Strain identifier

BacDive ID: 136835

Type strain: No

Species: Vibrio aestuarianus subsp. francensis

Strain Designation: 02/041

Strain history: CIP <- 2008, M. Garnier, IFREMER, Plouzané, France: strain 02/041, Vibrio aestuarianus

NCBI tax ID(s): 1443279 (subspecies)

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General

@ref: 36512

BacDive-ID: 136835

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio aestuarianus subsp. francensis 02/041 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 1443279
  • Matching level: subspecies

strain history

@refhistory
365122008, M. Garnier, IFREMER, Plouzane, France: strain 02/041, Vibrio aestuarianus
36512CIP <- 2008, M. Garnier, IFREMER, Plouzané, France: strain 02/041, Vibrio aestuarianus

doi: 10.13145/bacdive136835.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio aestuarianus subsp. francensis
  • full scientific name: Vibrio aestuarianus subsp. francensis Garcia et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Vibrio aestuarianus subsp. francensis

@ref: 36512

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio aestuarianus

strain designation: 02/041

type strain: no

Morphology

cell morphology

  • @ref: 36512
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36512Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
36512CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

  • @ref: 36512
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36512
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 36512
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3651217632nitrate+reduction
3651216301nitrite-reduction

metabolite production

  • @ref: 36512
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36512oxidase+
36512catalase+1.11.1.6
36512urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36512-++++++---++++---+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36512Argenton, BretagneFranceFRAEurope
36512Argenton, BrittanyFranceFRAEuropeOther, Crassostrea gigas2002

Safety information

risk assessment

  • @ref: 36512
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36512

culture collection no.: CIP 109791, LMG 24517

literature

  • topic: Phylogeny
  • Pubmed-ID: 33507857
  • title: Vibrio aestuarianus subsp. cardii subsp. nov., pathogenic to the edible cockles Cerastoderma edule in France, and establishment of Vibrio aestuarianus subsp. aestuarianus subsp. nov. and Vibrio aestuarianus subsp. francensis subsp. nov.
  • authors: Garcia C, Mesnil A, Tourbiez D, Moussa M, Dubreuil C, Goncalves de Sa A, Chollet B, Godfrin Y, Degremont L, Serpin D, Travers MA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004654
  • year: 2021
  • mesh: Animals, Bacterial Typing Techniques/methods, Base Composition, Cardiidae/*microbiology, DNA, Bacterial/genetics, France, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/isolation & purification
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36512Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109791Collection of Institut Pasteur (CIP 109791)
68382Automatically annotated from API zym