Strain identifier

BacDive ID: 136785

Type strain: No

Species: Citrobacter murliniae

Strain history: CIP <- 1996, P.A.D. Grimont, Inst. Pasteur, Paris, France <- CDC: strain 335-80, genomospecies 11

NCBI tax ID(s): 67829 (species)

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General

@ref: 36397

BacDive-ID: 136785

keywords: Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Citrobacter murliniae CIP 104930 is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 67829
  • Matching level: species

strain history

  • @ref: 36397
  • history: CIP <- 1996, P.A.D. Grimont, Inst. Pasteur, Paris, France <- CDC: strain 335-80, genomospecies 11

doi: 10.13145/bacdive136785.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Citrobacter
  • species: Citrobacter murliniae
  • full scientific name: Citrobacter murliniae Brenner et al. 2000

@ref: 36397

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Citrobacter

species: Citrobacter murliniae

type strain: no

Morphology

cell morphology

  • @ref: 36397
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36397MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36397CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
36397positivegrowth30
36397positivegrowth5-41

Physiology and metabolism

oxygen tolerance

  • @ref: 36397
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3639729864mannitol+fermentation
3639716947citrate+carbon source
3639717234glucose-fermentation
3639717632nitrate+reduction
3639716301nitrite+reduction
3639715792malonate-assimilation
36397132112sodium thiosulfate+builds gas from
3639717234glucose+degradation

antibiotic resistance

  • @ref: 36397
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 36397
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3639715688acetoin-
3639717234glucose+

enzymes

@refvalueactivityec
36397oxidase-
36397beta-galactosidase+3.2.1.23
36397alcohol dehydrogenase-1.1.1.1
36397gelatinase-
36397catalase-1.11.1.6
36397lysine decarboxylase-4.1.1.18
36397ornithine decarboxylase-4.1.1.17
36397phenylalanine ammonia-lyase-4.3.1.24
36397tryptophan deaminase-
36397urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36397-++--+----++-+-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36397++++++---+++-+++++-+++--++---+-+-+--+--+---+++-+++--++++++-++------------+-+---++--+--+-+++++++-+++

Safety information

risk assessment

  • @ref: 36397
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36397

culture collection no.: CIP 104930

straininfo link

  • @ref: 93846
  • straininfo: 67885

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36397Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104930Collection of Institut Pasteur (CIP 104930)
68382Automatically annotated from API zym
93846Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67885.1