Strain identifier

BacDive ID: 136633

Type strain: No

Species: Escherichia coli

Strain Designation: TW 00460, DEC2a

Strain history: CIP <- 2001, T.S. Whittam, Michigan State Univ., East Lansing, Michigan, USA: strain DEC2a

NCBI tax ID(s): 562 (species)

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General

@ref: 36107

BacDive-ID: 136633

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Escherichia coli TW 00460 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

@refhistory
361072001, T.S. Whittam, Univ., East Lansing, USA: strain DEC2a
36107CIP <- 2001, T.S. Whittam, Michigan State Univ., East Lansing, Michigan, USA: strain DEC2a

doi: 10.13145/bacdive136633.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 36107

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: TW 00460, DEC2a

type strain: no

Morphology

cell morphology

  • @ref: 36107
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36107MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36107CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36107positivegrowth30mesophilic
36107positivegrowth10-41
36107nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36107
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371erythritol-builds acid from17113
36107mannitol+fermentation29864
36107citrate-carbon source16947
36107esculin-hydrolysis4853
36107glucose+fermentation17234
36107lactose+fermentation17716
36107nitrate+reduction17632
36107nitrite+reduction16301
36107malonate-assimilation15792
36107sodium thiosulfate-builds gas from132112

antibiotic resistance

  • @ref: 36107
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 36107
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3610715688acetoin-
3610717234glucose+

enzymes

@refvalueactivityec
36107oxidase-
36107beta-galactosidase-3.2.1.23
36107alcohol dehydrogenase-1.1.1.1
36107gelatinase-
36107catalase+1.11.1.6
36107lysine decarboxylase+4.1.1.18
36107ornithine decarboxylase-4.1.1.17
36107phenylalanine ammonia-lyase-4.3.1.24
36107tryptophan deaminase-
36107urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36107-++--+----++-+++----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
36107+/--+/-+/-+/-+/----+/-+/-+/-+/-+/-+/-+/--+/----+/-------+/-+/-+/-+/---+/------+/---+/-+/-+/-+/--+/-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36107++++++++---++++--+-+++-++-+--+-+-+-----+---+-+--++---+++-+-++-+--+---------+---++-+---+--++++++-+--

Isolation, sampling and environmental information

isolation

@refcountrycontinentsample typeorigin.countryisolation date
36107CongoAfrica
36107Democratic Republic of the CongoAfricaHuman, InfantCOD1962

Safety information

risk assessment

  • @ref: 36107
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36107

culture collection no.: CIP 107188, CDC 3787-62

straininfo link

  • @ref: 93743
  • straininfo: 362051

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36107Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107188Collection of Institut Pasteur (CIP 107188)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
93743Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID362051.1