Strain identifier

BacDive ID: 13653

Type strain: No

Species: Antarctobacter heliothermus

Strain Designation: EL-165

Strain history: CIP <- 2000, P. Hirsch, Kiel Univ., Kiel, Germany: strain EL-165

NCBI tax ID(s): 74033 (species)

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General

@ref: 4368

BacDive-ID: 13653

DSM-Number: 11440

keywords: Bacteria, psychrophilic, Gram-negative, rod-shaped

description: Antarctobacter heliothermus EL-165 is a psychrophilic, Gram-negative, rod-shaped bacterium that was isolated from water sediment.

NCBI tax id

  • NCBI tax id: 74033
  • Matching level: species

strain history

@refhistory
4368<- M. Labrenz <- P. Hirsch, Inst. Allg. Mikrobiol. Univ. Kiel
119860CIP <- 2000, P. Hirsch, Kiel Univ., Kiel, Germany: strain EL-165

doi: 10.13145/bacdive13653.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Antarctobacter
  • species: Antarctobacter heliothermus
  • full scientific name: Antarctobacter heliothermus Labrenz et al. 1998

@ref: 4368

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Antarctobacter

species: Antarctobacter heliothermus

full scientific name: Antarctobacter heliothermus Labrenz et al. 1998

strain designation: EL-165

type strain: no

Morphology

cell morphology

  • @ref: 119860
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4368EKHO LAKE STRAINS MEDIUM (DSMZ Medium 621a)yeshttps://mediadive.dsmz.de/medium/621aName: EKHO LAKE STRAINS MEDIUM (DSMZ Medium 621a) Composition: NaCl 22.6553 g/l Agar 15.0 g/l MgCl2 x 6 H2O 4.80666 g/l Na2SO4 3.77991 g/l CaCl2 1.06343 g/l KCl 0.64076 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l NaHCO3 0.18528 g/l CaCl2 x 2 H2O 0.0703158 g/l H3BO3 0.02509 g/l SrCl2 0.02316 g/l KBr 0.00579 g/l NaF 0.002895 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water
35942Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119860CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
4368positivegrowth20psychrophilic
35942positivegrowth22psychrophilic
119860positivegrowth15-30
119860nogrowth5psychrophilic
119860nogrowth37mesophilic
119860nogrowth41thermophilic
119860nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1198604853esculin-hydrolysis
119860606565hippurate-hydrolysis
11986017632nitrate-builds gas from
11986017632nitrate+reduction
11986016301nitrite-builds gas from
11986016301nitrite-reduction

metabolite production

  • @ref: 119860
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
119860oxidase+
119860beta-galactosidase+3.2.1.23
119860alcohol dehydrogenase-1.1.1.1
119860gelatinase+/-
119860amylase-
119860caseinase-3.4.21.50
119860catalase-1.11.1.6
119860tween esterase-
119860gamma-glutamyltransferase+2.3.2.2
119860lecithinase-
119860lipase-
119860lysine decarboxylase-4.1.1.18
119860ornithine decarboxylase-4.1.1.17
119860phenylalanine ammonia-lyase-4.3.1.24
119860protease-
119860tryptophan deaminase-
119860urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119860-+++-+----+++-------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
4368water sedimenteast site of Antarctica, Ekho Lake, Vestfold HillsAustralia and Oceania
119860Environment, Water samplesEkho lakeAntarcticaAntarcticaATA

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Sediment

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
43681Risk group (German classification)
1198601Risk group (French classification)

Sequence information

GC content

  • @ref: 4368
  • GC-content: 63.3-62.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 4368

culture collection no.: DSM 11440, CIP 106396

straininfo link

  • @ref: 82836
  • straininfo: 49111

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4368Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11440)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11440
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35942Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18521
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
82836Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49111.1StrainInfo: A central database for resolving microbial strain identifiers
119860Curators of the CIPCollection of Institut Pasteur (CIP 106396)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106396