Strain identifier

BacDive ID: 136520

Type strain: No

Species: Tenacibaculum ovolyticum

Strain Designation: VKB 004

Strain history: CIP <- 2000, J.F. Bernardet, INRA, Jouy-en-Josas, France <- G.H. Hansen: strain VKB 004

NCBI tax ID(s): 104270 (species)

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General

@ref: 35944

BacDive-ID: 136520

keywords: Bacteria, psychrophilic, Gram-negative, rod-shaped

description: Tenacibaculum ovolyticum VKB 004 is a psychrophilic, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 104270
  • Matching level: species

strain history

  • @ref: 35944
  • history: CIP <- 2000, J.F. Bernardet, INRA, Jouy-en-Josas, France <- G.H. Hansen: strain VKB 004

doi: 10.13145/bacdive136520.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Tenacibaculum
  • species: Tenacibaculum ovolyticum
  • full scientific name: Tenacibaculum ovolyticum (Hansen et al. 1992) Suzuki et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Flexibacter ovolyticus

@ref: 35944

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Tenacibaculum

species: Tenacibaculum ovolyticum

strain designation: VKB 004

type strain: no

Morphology

cell morphology

  • @ref: 35944
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 35944
  • production: no
  • name: Flexirubin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35944Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
35944CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
35944positivegrowth15psychrophilic
35944positivegrowth5-22psychrophilic
35944nogrowth25mesophilic
35944nogrowth30mesophilic
35944nogrowth37mesophilic
35944nogrowth41thermophilic
35944nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
359444853esculin-hydrolysis
35944606565hippurate-hydrolysis
3594417632nitrate+reduction
3594416301nitrite-reduction
3594415792malonate-assimilation

metabolite production

  • @ref: 35944
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
35944oxidase+
35944beta-galactosidase-3.2.1.23
35944alcohol dehydrogenase-1.1.1.1
35944gelatinase+
35944amylase-
35944caseinase+3.4.21.50
35944catalase-1.11.1.6
35944tween esterase+
35944gamma-glutamyltransferase+2.3.2.2
35944lecithinase+
35944lipase+
35944lysine decarboxylase-4.1.1.18
35944ornithine decarboxylase-4.1.1.17
35944phenylalanine ammonia-lyase-4.3.1.24
35944protease+
35944tryptophan deaminase-
35944urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35944-+++-+++--++--------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
35944NorwayNOREurope
35944NorwayNOREuropeHalibut, Hipoglossus hipoglossus,water in egg incubator1989

Safety information

risk assessment

  • @ref: 35944
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35944

culture collection no.: CIP 106404, NCIMB 13129, LMG 13027

straininfo link

  • @ref: 93659
  • straininfo: 14418

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35944Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106404Collection of Institut Pasteur (CIP 106404)
68382Automatically annotated from API zym
93659Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14418.1