Strain identifier

BacDive ID: 136441

Type strain: No

Species: Shigella sonnei

Strain Designation: CNRSS 99 9901

Strain history: CIP <- 1999, P. Bouvet, Inst. Pasteur, Paris, France: strain CNRSS 99 9901

NCBI tax ID(s): 624 (species)

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General

@ref: 35861

BacDive-ID: 136441

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped

description: Shigella sonnei CNRSS 99 9901 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 624
  • Matching level: species

strain history

@refhistory
358611999, P. Bouvet, Inst. Pasteur, Paris, France: strain CNRSS 99 9901
35861CIP <- 1999, P. Bouvet, Inst. Pasteur, Paris, France: strain CNRSS 99 9901

doi: 10.13145/bacdive136441.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Shigella
  • species: Shigella sonnei
  • full scientific name: Shigella sonnei (Levine 1920) Weldin 1927 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium sonnei

@ref: 35861

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Shigella

species: Shigella sonnei

strain designation: CNRSS 99 9901

type strain: no

Morphology

cell morphology

  • @ref: 35861
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35861MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35861CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
35861CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
35861positivegrowth30mesophilic
35861positivegrowth10-41
35861nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35861
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3586129864mannitol+fermentation
3586116947citrate-carbon source
3586117234glucose+fermentation
3586117716lactose-fermentation
3586117632nitrate+reduction
3586116301nitrite+reduction
3586115792malonate-assimilation
35861132112sodium thiosulfate-builds gas from
3586117234glucose+degradation

antibiotic resistance

  • @ref: 35861
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 35861
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3586115688acetoin-
3586117234glucose+

enzymes

@refvalueactivityec
35861oxidase-
35861beta-galactosidase+3.2.1.23
35861alcohol dehydrogenase-1.1.1.1
35861gelatinase-
35861catalase+1.11.1.6
35861lysine decarboxylase-4.1.1.18
35861ornithine decarboxylase-4.1.1.17
35861tryptophan deaminase-
35861urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35861-++--+++--++-+-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35861+++++----++--++----++----------+-+---------++---++----+----++--------------+---++-+---+--+-++-+----

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
35861FranceFRAEurope
35861FranceFRAEuropeHuman, Feces1999

Safety information

risk assessment

  • @ref: 35861
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35861

culture collection no.: CIP 106347

straininfo link

  • @ref: 93599
  • straininfo: 70186

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35861Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106347Collection of Institut Pasteur (CIP 106347)
68382Automatically annotated from API zym
93599Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID70186.1