Strain identifier

BacDive ID: 136348

Type strain: No

Species: Nocardia farcinica

Strain Designation: A-0316

Strain history: CIP <- 1996, JCM <- KCC: strain A-0316 <- IFM <- ITK <- IMRU: strain 3409, Nocardia asteroides

NCBI tax ID(s): 37329 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.2 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 9.2 (current version)

General

@ref: 35738

BacDive-ID: 136348

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Nocardia farcinica A-0316 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Nocardiaceae.

NCBI tax id

  • NCBI tax id: 37329
  • Matching level: species

strain history

@refhistory
67770KCC A-0316 <-- IFM 0006 <-- ITK <-- IMRU 3409.
35738CIP <- 1996, JCM <- KCC: strain A-0316 <- IFM <- ITK <- IMRU: strain 3409, Nocardia asteroides

doi: 10.13145/bacdive136348.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia farcinica
  • full scientific name: Nocardia farcinica Trevisan 1889 (Approved Lists 1980)

@ref: 35738

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia farcinica

strain designation: A-0316

type strain: no

Morphology

cell morphology

  • @ref: 35738
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 35738

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35738MEDIUM 146 - for Nocardia farcinica and Nocardia pseudosporangiferayesDistilled water make up to (1000.000 ml);Sodium chloride (5.000 g);Agar(15.000 g);Glucose (10.000 g);Yeast extract (2.000 g);Beef extract (1.000 g)
35738CIP Medium 146yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=146

culture temp

@refgrowthtypetemperature
35738positivegrowth30
67770positivegrowth37
35738positivegrowth10-45

Physiology and metabolism

oxygen tolerance

  • @ref: 35738
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
35738NaClpositivegrowth0-4 %
35738NaClnogrowth6 %
35738NaClnogrowth8 %
35738NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3573816947citrate-carbon source
357384853esculin-hydrolysis
35738606565hippurate-hydrolysis
3573817632nitrate+reduction
3573816301nitrite-reduction
3573817632nitrate-respiration
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
68371Potassium 5-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol+builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

antibiotic resistance

  • @ref: 35738
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 35738
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3573815688acetoin-
3573817234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
35738oxidase-
35738beta-galactosidase+3.2.1.23
35738alcohol dehydrogenase-1.1.1.1
35738gelatinase-
35738amylase-
35738DNase-
35738caseinase-3.4.21.50
35738catalase+1.11.1.6
35738tween esterase-
35738gamma-glutamyltransferase+2.3.2.2
35738lecithinase-
35738lipase-
35738lysine decarboxylase-4.1.1.18
35738ornithine decarboxylase-4.1.1.17
35738phenylalanine ammonia-lyase-4.3.1.24
35738protease-
35738tryptophan deaminase-
35738urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35738-+++-++++-++-+-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35738+/---+++---++++-+-++--++-+++++++++--+---+--------+/--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35738++-----------------------------------------+-----+-----------+-------------+---++---+---+-------+--

Safety information

risk assessment

  • @ref: 35738
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35738

culture collection no.: CIP 104828, IFM 0006, JCM 3316

straininfo link

  • @ref: 93518
  • straininfo: 63985

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35738Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104828Collection of Institut Pasteur (CIP 104828)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
93518Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID63985.1