Strain identifier

BacDive ID: 136020

Type strain: No

Species: Empedobacter brevis

Strain Designation: 539-85

Strain history: CIP <- 1985, Lab. Ident. Inst. Pasteur, Paris, France, Flavobacterium breve: strain 539-85 <- Quinze Vingts Hosp., Paris, France

NCBI tax ID(s): 247 (species)

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General

@ref: 35318

BacDive-ID: 136020

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Empedobacter brevis 539-85 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Weeksellaceae.

NCBI tax id

  • NCBI tax id: 247
  • Matching level: species

strain history

  • @ref: 35318
  • history: CIP <- 1985, Lab. Ident. Inst. Pasteur, Paris, France, Flavobacterium breve: strain 539-85 <- Quinze Vingts Hosp., Paris, France

doi: 10.13145/bacdive136020.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter brevis
  • full scientific name: Empedobacter brevis (Holmes and Owen 1982 ex Lustig 1890) Vandamme et al. 1994

  • synonyms

    @refsynonym
    20215Flavobacterium brevis
    20215Flavobacterium breve

@ref: 35318

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Empedobacter

species: Empedobacter brevis

strain designation: 539-85

type strain: no

Morphology

cell morphology

  • @ref: 35318
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 35318

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35318MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35318CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
35318positivegrowth30mesophilic
35318positivegrowth15-37
35318nogrowth5psychrophilic
35318nogrowth41thermophilic
35318nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35318
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
35318NaClpositivegrowth0-2 %
35318NaClnogrowth4 %
35318NaClnogrowth6 %
35318NaClnogrowth8 %
35318NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3531816947citrate-carbon source
353184853esculin-hydrolysis
35318606565hippurate+hydrolysis
3531817632nitrate-builds gas from
3531817632nitrate-reduction
3531816301nitrite-builds gas from
3531816301nitrite-reduction
3531815792malonate-assimilation
3531817234glucose-degradation
3531817632nitrate-respiration

antibiotic resistance

  • @ref: 35318
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 35318
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3531815688acetoin-
3531817234glucose-

enzymes

@refvalueactivityec
35318oxidase+
35318beta-galactosidase+3.2.1.23
35318alcohol dehydrogenase-1.1.1.1
35318gelatinase+
35318amylase-
35318DNase+
35318caseinase-3.4.21.50
35318catalase+1.11.1.6
35318tween esterase-
35318gamma-glutamyltransferase+2.3.2.2
35318lecithinase-
35318lipase-
35318lysine decarboxylase-4.1.1.18
35318ornithine decarboxylase-4.1.1.17
35318phenylalanine ammonia-lyase-4.3.1.24
35318protease-
35318tryptophan deaminase-
35318urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35318-+++-+++++++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35318+--------+---------------------+-----------------------------+-------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
35318ParisFranceFRAEurope
35318ParisFranceFRAEuropeHuman, Eye swab1985

Safety information

risk assessment

  • @ref: 35318
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35318

culture collection no.: CIP 101742

straininfo link

  • @ref: 93269
  • straininfo: 68225

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35318Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101742Collection of Institut Pasteur (CIP 101742)
68382Automatically annotated from API zym
93269Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68225.1