Strain identifier
BacDive ID: 135929
Type strain:
Species: Clostridium perfringens
Strain Designation: 167/51
Strain history: CIP <- 2000, ATCC <- NCTC <- B. Hobbs: strain 167/51
NCBI tax ID(s): 1502 (species)
General
@ref: 35206
BacDive-ID: 135929
keywords: genome sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive
description: Clostridium perfringens 167/51 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 1502
- Matching level: species
strain history
- @ref: 35206
- history: CIP <- 2000, ATCC <- NCTC <- B. Hobbs: strain 167/51
doi: 10.13145/bacdive135929.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium perfringens
- full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus perfringens
@ref: 35206
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium perfringens
strain designation: 167/51
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
35206 | positive | rod-shaped | no |
colony morphology
- @ref: 35206
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35206 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
35206 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
35206 | positive | growth | 37 | mesophilic |
51853 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
51853 | anaerobe | |
69480 | anaerobe | 99.278 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 99.721 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
35206 | 17108 | D-arabinose | - | degradation |
35206 | 15824 | D-fructose | +/- | degradation |
35206 | 17634 | D-glucose | +/- | degradation |
35206 | 65327 | D-xylose | - | degradation |
35206 | 17057 | cellobiose | - | degradation |
35206 | 17716 | lactose | +/- | degradation |
35206 | 17306 | maltose | +/- | degradation |
35206 | 17814 | salicin | - | degradation |
35206 | 17992 | sucrose | +/- | degradation |
35206 | 4853 | esculin | - | hydrolysis |
35206 | 17632 | nitrate | + | reduction |
35206 | 16301 | nitrite | + | reduction |
35206 | 17632 | nitrate | + | respiration |
metabolite production
- @ref: 35206
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
35206 | oxidase | - | |
35206 | beta-galactosidase | + | 3.2.1.23 |
35206 | gelatinase | +/- | |
35206 | amylase | + | |
35206 | DNase | + | |
35206 | caseinase | + | 3.4.21.50 |
35206 | catalase | - | 1.11.1.6 |
35206 | tween esterase | - | |
35206 | lecithinase | + | |
35206 | lipase | - | |
35206 | protease | - | |
35206 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35206 | - | + | + | + | - | - | - | - | + | - | + | + | + | + | + | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | sampling date | isolation date |
---|---|---|---|---|---|---|---|
35206 | London | United Kingdom | GBR | Europe | |||
51853 | Feces,food poisoning | 1951 | |||||
35206 | London | United Kingdom | GBR | Europe | Faeces | 1951 |
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Gastrointestinal tract
- Cat3: #Feces (Stool)
Safety information
risk assessment
- @ref: 35206
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Clostridium perfringens NCTC8678 | GCA_901523095 | contig | ncbi | 1502 |
66792 | Clostridium perfringens strain NCTC8678 | 1502.1073 | wgs | patric | 1502 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 84.533 | no |
gram-positive | yes | 95.838 | no |
anaerobic | yes | 98.124 | yes |
aerobic | no | 95.476 | yes |
halophile | no | 62.668 | no |
spore-forming | yes | 90.807 | no |
thermophile | no | 97.551 | yes |
glucose-util | yes | 90.654 | no |
flagellated | no | 93.081 | no |
glucose-ferment | yes | 75.357 | no |
External links
@ref: 35206
culture collection no.: CIP 106515, ATCC 12919, NCTC 8678, CCUG 33957, LMG 12224
straininfo link
- @ref: 93193
- straininfo: 1963
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
35206 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106515 | Collection of Institut Pasteur (CIP 106515) | |
51853 | Curators of the CCUG | https://www.ccug.se/strain?id=33957 | Culture Collection University of Gothenburg (CCUG) (CCUG 33957) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
93193 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID1963.1 |