Strain identifier

BacDive ID: 135929

Type strain: No

Species: Clostridium perfringens

Strain Designation: 167/51

Strain history: CIP <- 2000, ATCC <- NCTC <- B. Hobbs: strain 167/51

NCBI tax ID(s): 1502 (species)

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General

@ref: 35206

BacDive-ID: 135929

keywords: genome sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Clostridium perfringens 167/51 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

strain history

  • @ref: 35206
  • history: CIP <- 2000, ATCC <- NCTC <- B. Hobbs: strain 167/51

doi: 10.13145/bacdive135929.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus perfringens
    20215Clostridioides perfringens

@ref: 35206

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

strain designation: 167/51

type strain: no

Morphology

cell morphology

  • @ref: 35206
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 35206
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35206MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
35206CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperature
35206positivegrowth37
51853positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
51853anaerobe
125439anaerobe99.4

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3520617108D-arabinose-degradation
3520615824D-fructose+/-degradation
3520617634D-glucose+/-degradation
3520665327D-xylose-degradation
3520617057cellobiose-degradation
3520617716lactose+/-degradation
3520617306maltose+/-degradation
3520617814salicin-degradation
3520617992sucrose+/-degradation
352064853esculin-hydrolysis
3520617632nitrate+reduction
3520616301nitrite+reduction
3520617632nitrate+respiration

metabolite production

  • @ref: 35206
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382valine arylamidase-
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
35206oxidase-
35206beta-galactosidase+3.2.1.23
35206gelatinase+/-
35206amylase+
35206DNase+
35206caseinase+3.4.21.50
35206catalase-1.11.1.6
35206tween esterase-
35206lecithinase+
35206lipase-
35206protease-
35206urease-3.5.1.5
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase-3.4.11.1
68382alkaline phosphatase+3.1.3.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35206-+++----+-++++++-+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling dateisolation date
35206LondonUnited KingdomGBREurope
51853Feces,food poisoning1951
35206LondonUnited KingdomGBREuropeFaeces1951

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Gastrointestinal tract
  • Cat3: #Feces (Stool)

Safety information

risk assessment

  • @ref: 35206
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium perfringens NCTC8678GCA_901523095contigncbi1502
66792Clostridium perfringens strain NCTC86781502.1073wgspatric1502

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes76.772no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes88.326yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes74.3no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.051no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno92.812yes
125438motile2+flagellatedAbility to perform flagellated movementno67.142no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes83.5
125439BacteriaNetmotilityAbility to perform movementyes79.5
125439BacteriaNetgram_stainReaction to gram-stainingpositive80.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthanaerobe99.4

External links

@ref: 35206

culture collection no.: CIP 106515, ATCC 12919, NCTC 8678, CCUG 33957, LMG 12224

straininfo link

  • @ref: 93193
  • straininfo: 1963

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35206Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106515Collection of Institut Pasteur (CIP 106515)
51853Curators of the CCUGhttps://www.ccug.se/strain?id=33957Culture Collection University of Gothenburg (CCUG) (CCUG 33957)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
93193Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1963.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG