Strain identifier

BacDive ID: 135767

Type strain: No

Species: Novosphingobium resinovorum

Strain history: CIP <- 1961, B. Delaporte, Inst. Pasteur, Paris, France

NCBI tax ID(s): 158500 (species)

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General

@ref: 35004

BacDive-ID: 135767

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Novosphingobium resinovorum CIP 61.13 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Erythrobacteraceae.

NCBI tax id

  • NCBI tax id: 158500
  • Matching level: species

strain history

@refhistory
350041961, B. Delaporte, Inst. Pasteur, Paris, France
35004CIP <- 1961, B. Delaporte, Inst. Pasteur, Paris, France

doi: 10.13145/bacdive135767.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Novosphingobium
  • species: Novosphingobium resinovorum
  • full scientific name: Novosphingobium resinovorum (Delaporte and Daste 1956) Lim et al. 2007

  • synonyms

    @refsynonym
    20215Flavobacterium resinovorum
    20215Sphingomonas subarctica
    20215Novosphingobium subarcticum

@ref: 35004

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Novosphingobium

species: Novosphingobium resinovorum

type strain: no

Morphology

cell morphology

  • @ref: 35004
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35004MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35004CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
35004positivegrowth30mesophilic
35004nogrowth5psychrophilic
35004nogrowth10psychrophilic
35004nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35004
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
35004NaClpositivegrowth0-4 %
35004NaClnogrowth6 %
35004NaClnogrowth8 %
35004NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-ribose-builds acid from16988
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
35004citrate+carbon source16947
35004nitrate-reduction17632
35004nitrite-reduction16301

metabolite production

  • @ref: 35004
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
35004oxidase-
35004beta-galactosidase+3.2.1.23
35004alcohol dehydrogenase-1.1.1.1
35004gelatinase-
35004lipase+
35004lysine decarboxylase-4.1.1.18
35004ornithine decarboxylase-4.1.1.17
35004phenylalanine ammonia-lyase+4.3.1.24
35004tryptophan deaminase+
35004urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35004---+/--+/----+/-++/-+/---------+/-+/-+/-+-+/-+---+/----+/---+----------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
35004Ile d'OléronFranceFRAEurope
35004Oléron IslandFranceFRAEuropeEnvironment, Forest soil, pinus maritima1954

Safety information

risk assessment

  • @ref: 35004
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35004

culture collection no.: CIP 61.13

straininfo link

  • @ref: 93056
  • straininfo: 68596

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35004Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2061.13Collection of Institut Pasteur (CIP 61.13)
68371Automatically annotated from API 50CH acid
93056Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68596.1