Strain identifier
BacDive ID: 13572
Type strain: 
Species: Rhizobium rhizogenes
Strain Designation: 38
Strain history: IAM 13572 <-- DSM 60572 <-- J. De Ley <-- A. Kerr 38.
NCBI tax ID(s): 359 (species)
version 8.1 (current version)
General
@ref: 9198
BacDive-ID: 13572
DSM-Number: 30200
keywords: Bacteria, mesophilic, plant pathogen
description: Rhizobium rhizogenes 38 is a mesophilic plant pathogen that was isolated from Prunus sp., stem gall.
NCBI tax id
- NCBI tax id: 359
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9198 | <- DSM 60572 <- J. De Ley <- A. Kerr, 38 (Agrobacterium sp.) |
| 67770 | IAM 13572 <-- DSM 60572 <-- J. De Ley <-- A. Kerr 38. |
doi: 10.13145/bacdive13572.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium rhizogenes
- full scientific name: Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001
synonyms
@ref synonym 20215 Phytomonas rhizogenes 20215 Agrobacterium rhizogenes
@ref: 9198
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium rhizogenes
full scientific name: Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001
strain designation: 38
type strain: no
Morphology
colony morphology
- @ref: 9198
- incubation period: 1-2 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9198 | RHIZOBIUM MEDIUM (DSMZ Medium 98) | yes | https://mediadive.dsmz.de/medium/98 | Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water |
| 9198 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9198 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | + | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 9198 | catalase | + | 1.11.1.6 |
| 9198 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | + | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9198 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | - | + | + | - | + |
| 9198 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | - | + | - | - | + |
| 9198 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|---|
| 9198 | Prunus sp., stem gall | Prunus | Australia | AUS | Australia and Oceania | |
| 67770 | Plum gall | Australia | AUS | Australia and Oceania | South Australia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Infection | #Plant infections | #Gall |
| #Host Body-Site | #Plant | #Stem (Branch) |
Safety information
risk assessment
- @ref: 9198
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 9198
culture collection no.: DSM 30200, DSM 60572, JCM 20921, IAM 13572
straininfo link
- @ref: 82759
- straininfo: 475
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9198 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30200) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30200 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 68369 | Automatically annotated from API 20NE | |||
| 82759 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID475.1 | StrainInfo: A central database for resolving microbial strain identifiers |