Strain identifier

BacDive ID: 135718

Type strain: No

Species: Shigella dysenteriae

Strain Designation: 54921

Strain history: CIP <- 1956, Chambon, Inst, Pasteur, Saigon: strain 54921

NCBI tax ID(s): 622 (species)

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General

@ref: 34899

BacDive-ID: 135718

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative

description: Shigella dysenteriae 54921 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 622
  • Matching level: species

strain history

@refhistory
348991956, Chambon, Inst; Pasteur, Saigon: strain 54921
34899CIP <- 1956, Chambon, Inst, Pasteur, Saigon: strain 54921

doi: 10.13145/bacdive135718.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Shigella
  • species: Shigella dysenteriae
  • full scientific name: Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus dysentericus

@ref: 34899

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Shigella

species: Shigella dysenteriae

strain designation: 54921

type strain: no

Morphology

cell morphology

  • @ref: 34899
  • gram stain: negative
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34899MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
34899CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
34899positivegrowth30mesophilic
34899positivegrowth10-41
34899nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34899
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3489929864mannitol-fermentation
3489916947citrate-carbon source
3489917234glucose+fermentation
3489917716lactose-fermentation
3489917632nitrate+reduction
3489916301nitrite+reduction
3489915792malonate-assimilation
34899132112sodium thiosulfate-builds gas from
3489917234glucose+degradation

antibiotic resistance

  • @ref: 34899
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 34899
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3489915688acetoin-
3489917234glucose+

enzymes

@refvalueactivityec
34899oxidase-
34899beta-galactosidase-3.2.1.23
34899alcohol dehydrogenase-1.1.1.1
34899gelatinase-
34899catalase-1.11.1.6
34899lysine decarboxylase-4.1.1.18
34899ornithine decarboxylase-4.1.1.17
34899phenylalanine ammonia-lyase-4.3.1.24
34899tryptophan deaminase-
34899urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34899-++--++++-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
34899-------------------------------+------------------------------+--+--------------------+-+----------

Isolation, sampling and environmental information

isolation

  • @ref: 34899
  • geographic location: Saigon
  • country: Vietnam
  • origin.country: VNM
  • continent: Asia

Safety information

risk assessment

  • @ref: 34899
  • biosafety level: 3
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34899

culture collection no.: CIP 56.17

straininfo link

  • @ref: 93017
  • straininfo: 70146

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34899Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.17Collection of Institut Pasteur (CIP 56.17)
68382Automatically annotated from API zym
93017Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID70146.1