Strain identifier

BacDive ID: 135550

Type strain: Yes

Species: Roseovarius albus

Strain history: CIP <- 2009, CECT

NCBI tax ID(s): 1247867 (species)

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General

@ref: 34710

BacDive-ID: 135550

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative

description: Roseovarius albus CIP 109942 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Roseobacteraceae.

NCBI tax id

  • NCBI tax id: 1247867
  • Matching level: species

strain history

@refhistory
347102009, CECT
34710CIP <- 2009, CECT

doi: 10.13145/bacdive135550.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Roseovarius
  • species: Roseovarius albus
  • full scientific name: Roseovarius albus Lucena et al. 2014

@ref: 34710

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Roseovarius

species: Roseovarius litoralis

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.998
34710negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34710Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
34710CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

  • @ref: 34710
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34710
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3471017632nitrate-reduction
3471016301nitrite-reduction

metabolite production

  • @ref: 34710
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34710oxidase+
34710catalase+1.11.1.6
34710urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34710-+---+----+---------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
34710VinarozSpainESPEurope
34710VinarozSpainESPEuropeEnvironment, Sea water, surface1990

Safety information

risk assessment

  • @ref: 34710
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Roseovarius albus CECT 7450GCA_900172335contigncbi1247867
66792Roseovarius albus strain CECT 74501247867.4wgspatric1247867
66792Roseovarius albus CECT 74502791355034draftimg1247867

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.716no
gram-positiveno97.432no
anaerobicno97.863no
aerobicyes88.789no
halophileyes84.76no
spore-formingno96.893no
thermophileno98.848no
glucose-utilno56.026no
flagellatedno96.529no
glucose-fermentno90.449no

External links

@ref: 34710

culture collection no.: CIP 109942, CECT 7450

literature

  • topic: Phylogeny
  • Pubmed-ID: 24488274
  • title: Roseovarius albus sp. nov., a new Alphaproteobacterium isolated from the Mediterranean Sea.
  • authors: Lucena T, Ruvira MA, Macian MC, Pujalte MJ, Arahal DR
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-014-0121-8
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Mediterranean Sea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Spain
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34710Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109942Collection of Institut Pasteur (CIP 109942)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1