Strain identifier
BacDive ID: 135543
Type strain:
Species: Bordetella holmesii
Strain Designation: 149013, G8341
Strain history: CIP <- 1995, R.S. Weyant, CDC: strain G8341 <- Riyadh Armed Forces Hosp., Saudi Arabia: strain 149013
NCBI tax ID(s): 35814 (species)
General
@ref: 34699
BacDive-ID: 135543
keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, oval-shaped
description: Bordetella holmesii 149013 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 35814
- Matching level: species
strain history
- @ref: 34699
- history: CIP <- 1995, R.S. Weyant, CDC: strain G8341 <- Riyadh Armed Forces Hosp., Saudi Arabia: strain 149013
doi: 10.13145/bacdive135543.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella holmesii
- full scientific name: Bordetella holmesii Weyant et al. 1995
@ref: 34699
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella holmesii
strain designation: 149013, G8341
type strain: no
Morphology
cell morphology
- @ref: 34699
- gram stain: negative
- cell shape: oval-shaped
- motility: no
colony morphology
- @ref: 34699
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
34699 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
34699 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
34699 | positive | growth | 37 | mesophilic |
34699 | positive | growth | 30-37 | mesophilic |
34699 | no | growth | 5 | psychrophilic |
34699 | no | growth | 10 | psychrophilic |
34699 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 34699
- oxygen tolerance: obligate aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
34699 | 16947 | citrate | - | carbon source |
34699 | 4853 | esculin | - | hydrolysis |
34699 | 17632 | nitrate | - | reduction |
34699 | 16301 | nitrite | - | reduction |
34699 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 34699
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
34699 | oxidase | + | |
34699 | alcohol dehydrogenase | - | 1.1.1.1 |
34699 | gelatinase | - | |
34699 | catalase | - | 1.11.1.6 |
34699 | lysine decarboxylase | - | 4.1.1.18 |
34699 | ornithine decarboxylase | - | 4.1.1.17 |
34699 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
34699 | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type |
---|---|---|---|---|
34699 | Saudi Arabia | SAU | Asia | |
34699 | Saudi Arabia | SAU | Asia | Human, Blood |
Safety information
risk assessment
- @ref: 34699
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 34699
culture collection no.: CIP 104396, ATCC 700053
straininfo link
- @ref: 92885
- straininfo: 43746
literature
- topic: Metabolism
- Pubmed-ID: 27448237
- title: BipA Is Associated with Preventing Autoagglutination and Promoting Biofilm Formation in Bordetella holmesii.
- authors: Hiramatsu Y, Saito M, Otsuka N, Suzuki E, Watanabe M, Shibayama K, Kamachi K
- journal: PLoS One
- DOI: 10.1371/journal.pone.0159999
- year: 2016
- mesh: Agglutination/*genetics, Agglutination Tests, Amino Acid Sequence, Animals, Bacterial Outer Membrane Proteins/chemistry/*genetics/*metabolism, *Biofilms, Bordetella/*physiology, Bordetella Infections/microbiology, Gene Expression Regulation, Bacterial, Mice, Mutation, Pneumonia, Bacterial/microbiology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
34699 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104396 | Collection of Institut Pasteur (CIP 104396) | |
68382 | Automatically annotated from API zym | |||
92885 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID43746.1 |