Strain identifier

BacDive ID: 135543

Type strain: No

Species: Bordetella holmesii

Strain Designation: 149013, G8341

Strain history: CIP <- 1995, R.S. Weyant, CDC: strain G8341 <- Riyadh Armed Forces Hosp., Saudi Arabia: strain 149013

NCBI tax ID(s): 35814 (species)

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General

@ref: 34699

BacDive-ID: 135543

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, oval-shaped

description: Bordetella holmesii 149013 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 35814
  • Matching level: species

strain history

  • @ref: 34699
  • history: CIP <- 1995, R.S. Weyant, CDC: strain G8341 <- Riyadh Armed Forces Hosp., Saudi Arabia: strain 149013

doi: 10.13145/bacdive135543.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella holmesii
  • full scientific name: Bordetella holmesii Weyant et al. 1995

@ref: 34699

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella holmesii

strain designation: 149013, G8341

type strain: no

Morphology

cell morphology

  • @ref: 34699
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

colony morphology

  • @ref: 34699

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34699MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
34699CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
34699positivegrowth37mesophilic
34699positivegrowth30-37mesophilic
34699nogrowth5psychrophilic
34699nogrowth10psychrophilic
34699nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34699
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3469916947citrate-carbon source
346994853esculin-hydrolysis
3469917632nitrate-reduction
3469916301nitrite-reduction
3469917632nitrate-respiration

metabolite production

  • @ref: 34699
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34699oxidase+
34699alcohol dehydrogenase-1.1.1.1
34699gelatinase-
34699catalase-1.11.1.6
34699lysine decarboxylase-4.1.1.18
34699ornithine decarboxylase-4.1.1.17
34699urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34699--++-----------+----

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
34699Saudi ArabiaSAUAsia
34699Saudi ArabiaSAUAsiaHuman, Blood

Safety information

risk assessment

  • @ref: 34699
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34699

culture collection no.: CIP 104396, ATCC 700053

straininfo link

  • @ref: 92885
  • straininfo: 43746

literature

  • topic: Metabolism
  • Pubmed-ID: 27448237
  • title: BipA Is Associated with Preventing Autoagglutination and Promoting Biofilm Formation in Bordetella holmesii.
  • authors: Hiramatsu Y, Saito M, Otsuka N, Suzuki E, Watanabe M, Shibayama K, Kamachi K
  • journal: PLoS One
  • DOI: 10.1371/journal.pone.0159999
  • year: 2016
  • mesh: Agglutination/*genetics, Agglutination Tests, Amino Acid Sequence, Animals, Bacterial Outer Membrane Proteins/chemistry/*genetics/*metabolism, *Biofilms, Bordetella/*physiology, Bordetella Infections/microbiology, Gene Expression Regulation, Bacterial, Mice, Mutation, Pneumonia, Bacterial/microbiology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34699Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104396Collection of Institut Pasteur (CIP 104396)
68382Automatically annotated from API zym
92885Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID43746.1