Strain identifier

BacDive ID: 135487

Type strain: No

Species: Niallia circulans

Strain history: CIP <- 2000, J.C. Baratti, Fac. Sci., Luminy, Marseille, France: strain MAS2 <- A. Kademi

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General

@ref: 34617

BacDive-ID: 135487

keywords: Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Niallia circulans CIP 106423 is an obligate aerobe, spore-forming, mesophilic bacterium of the family Bacillaceae.

strain history

  • @ref: 34617
  • history: CIP <- 2000, J.C. Baratti, Fac. Sci., Luminy, Marseille, France: strain MAS2 <- A. Kademi

doi: 10.13145/bacdive135487.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Niallia
  • species: Niallia circulans
  • full scientific name: Niallia circulans (Jordan 1890) Gupta et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus circulans

@ref: 34617

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus circulans

type strain: no

Morphology

cell morphology

  • @ref: 34617
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 34617

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34617MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
34617CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
34617positivegrowth30mesophilic
34617positivegrowth22-55
34617nogrowth10psychrophilic

culture pH

  • @ref: 34617
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 34617
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 34617
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
34617NaClpositivegrowth0-4 %
34617NaClnogrowth6 %
34617NaClnogrowth8 %
34617NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371starch-builds acid from28017
68371melibiose-builds acid from28053
68371esculin+builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371L-sorbose-builds acid from17266
68371methyl beta-D-xylopyranoside+builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
34617citrate-carbon source16947
34617esculin+hydrolysis4853
34617hippurate+hydrolysis606565
34617nitrate+reduction17632
34617nitrite-reduction16301

metabolite production

  • @ref: 34617
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3461715688acetoin-
3461717234glucose-

enzymes

@refvalueactivityec
34617oxidase-
34617beta-galactosidase+3.2.1.23
34617alcohol dehydrogenase-1.1.1.1
34617gelatinase-
34617amylase-
34617DNase-
34617caseinase-3.4.21.50
34617catalase+1.11.1.6
34617tween esterase-
34617gamma-glutamyltransferase-2.3.2.2
34617lecithinase-
34617lysine decarboxylase-4.1.1.18
34617ornithine decarboxylase-4.1.1.17
34617urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34617--++--------++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
34617+/---+/-----++/-+/-+/-+/--+/-+/--+/---+/---+/-++/-+/-+/-+/--+/-+/-+/-+/-+/--+/-+/-+/-----+/------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
34617+++++-+++++++--+--+-+++--+---+-+++-+-----+-------+----++---++--++--+---+++++++-++++++-+++++++++++++

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
34617MoroccoMARAfrica
34617MoroccoMARAfricaEnvironment, Soil

Safety information

risk assessment

  • @ref: 34617
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34617

culture collection no.: CIP 106423, MAS 2

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34617Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106423Collection of Institut Pasteur (CIP 106423)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym