Strain identifier

BacDive ID: 135432

Type strain: No

Species: Gallibacterium anatis

Strain Designation: CNPA63

Strain history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France: strain CNPA63 <- CCM, "Actinobacillus salpingitidis"

NCBI tax ID(s): 750 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 34545

BacDive-ID: 135432

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic

description: Gallibacterium anatis CNPA63 is a facultative anaerobe, mesophilic bacterium that was isolated from Animal, Hen.

NCBI tax id

  • NCBI tax id: 750
  • Matching level: species

strain history

  • @ref: 34545
  • history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France: strain CNPA63 <- CCM, "Actinobacillus salpingitidis"

doi: 10.13145/bacdive135432.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Gallibacterium
  • species: Gallibacterium anatis
  • full scientific name: Gallibacterium anatis (Mutters et al. 1985) Christensen et al. 2003
  • synonyms

    • @ref: 20215
    • synonym: Pasteurella anatis

@ref: 34545

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Gallibacterium

species: Gallibacterium anatis

strain designation: CNPA63

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no90.163
6948099.927negative
34545negativerod-shaped

colony morphology

  • @ref: 34545
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34545MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
34545CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
34545positivegrowth37mesophilic
34545positivegrowth41-45thermophilic
34545nogrowth15psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34545
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
34545esculin-hydrolysis4853
34545nitrate+reduction17632
34545nitrite+reduction16301

metabolite production

  • @ref: 34545
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3454515688acetoin+
3454517234glucose+

enzymes

@refvalueactivityec
34545oxidase+
34545alcohol dehydrogenase-1.1.1.1
34545gelatinase-
34545catalase+1.11.1.6
34545lysine decarboxylase-4.1.1.18
34545ornithine decarboxylase-4.1.1.17
34545urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34545-++++-----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
34545----+/------+++----+/-----------+-++-----------------

Isolation, sampling and environmental information

isolation

  • @ref: 34545
  • sample type: Animal, Hen

Safety information

risk assessment

  • @ref: 34545
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gallibacterium anatis CCM5995GCA_000771805contigncbi1396513
66792Gallibacterium anatis CCM59951396513.3wgspatric1396513
66792Gallibacterium anatis CCM59952833294882draftimg1396513

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.456no
gram-positiveno98.155no
anaerobicno96.959no
halophileyes58.5no
spore-formingno98.699no
glucose-utilno52.832no
thermophileno99.165no
aerobicno87.521no
flagellatedno96.992no
glucose-fermentyes51.127no

External links

@ref: 34545

culture collection no.: CIP 104143, CCM 5995, CCUG 23138

straininfo link

  • @ref: 92791
  • straininfo: 67125

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34545Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104143Collection of Institut Pasteur (CIP 104143)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92791Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67125.1