Strain identifier

BacDive ID: 135421

Type strain: No

Species: Capnocytophaga haemolytica

Strain Designation: A0406

Strain history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France <- T. Watanabe, Okayama Univ., Okayama, Japan: strain A0406 <- T. Yamamoto, Japan

NCBI tax ID(s): 45243 (species)

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General

@ref: 34534

BacDive-ID: 135421

keywords: Bacteria, facultative anaerobe, Gram-negative, rod-shaped

description: Capnocytophaga haemolytica A0406 is a facultative anaerobe, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 45243
  • Matching level: species

strain history

  • @ref: 34534
  • history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France <- T. Watanabe, Okayama Univ., Okayama, Japan: strain A0406 <- T. Yamamoto, Japan

doi: 10.13145/bacdive135421.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Capnocytophaga
  • species: Capnocytophaga haemolytica
  • full scientific name: Capnocytophaga haemolytica Yamamoto et al. 1994

@ref: 34534

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Capnocytophaga

species: Capnocytophaga haemolytica

strain designation: A0406

type strain: no

Morphology

cell morphology

  • @ref: 34534
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 34534
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34534MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
34534CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperature
34534positivegrowth37
34534positivegrowth30-41

Physiology and metabolism

oxygen tolerance

  • @ref: 34534
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
34534esculin+hydrolysis4853
34534nitrate+reduction17632
34534nitrite-reduction16301
34534sodium thiosulfate-builds gas from132112

metabolite production

  • @ref: 34534
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34534oxidase-
34534beta-galactosidase-3.2.1.23
34534alcohol dehydrogenase-1.1.1.1
34534gelatinase-
34534catalase-1.11.1.6
34534lysine decarboxylase-4.1.1.18
34534ornithine decarboxylase-4.1.1.17
34534urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
34534----+/--------------------+/-----------+/----+/----------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
34534JapanJPNAsia
34534JapanJPNAsiaHuman, Supragingival dental plaque1992

Safety information

risk assessment

  • @ref: 34534
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34534

culture collection no.: CIP 104127, ATCC 700051

straininfo link

  • @ref: 92782
  • straininfo: 43745

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34534Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104127Collection of Institut Pasteur (CIP 104127)
68371Automatically annotated from API 50CH acid
92782Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID43745.1