Strain identifier
BacDive ID: 13536
Type strain: 
Species: Agrobacterium sp.
Strain Designation: 0362
Strain history: <- DSM 60578 <- J. De Ley <- A.C. Hayward, 0362
NCBI tax ID(s): 361 (species)
version 9 (current version)
General
@ref: 9199
BacDive-ID: 13536
DSM-Number: 30201
keywords: Bacteria
description: Agrobacterium sp. 0362 is a bacterium that was isolated from John Innes potting compost.
NCBI tax id
- NCBI tax id: 361
- Matching level: species
strain history
- @ref: 9199
- history: <- DSM 60578 <- J. De Ley <- A.C. Hayward, 0362
doi: 10.13145/bacdive13536.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Agrobacterium
- species: Agrobacterium sp.
- full scientific name: Agrobacterium Conn 1942 (Approved Lists 1980)
@ref: 9199
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Agrobacterium
species: Agrobacterium sp.
full scientific name: Agrobacterium sp.
strain designation: 0362
type strain: no
Culture and growth conditions
culture medium
- @ref: 9199
- name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54)
- growth: yes
- link: https://mediadive.dsmz.de/medium/54
- composition: Name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l Yeast extract 10.0 g/l Distilled water
culture temp
- @ref: 9199
- growth: positive
- type: growth
- temperature: 27
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | + | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | + | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9199 | + | - | - | - | + | + | - | + | + | + | + | + | + | + | +/- | - | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 9199
- sample type: John Innes potting compost
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
- Cat1: #Engineered
- Cat2: #Biodegradation
- Cat3: #Composting
External links
@ref: 9199
culture collection no.: DSM 30201, DSM 60578
straininfo link
- @ref: 82727
- straininfo: 459
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9199 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30201) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30201 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 82727 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID459.1 | StrainInfo: A central database for resolving microbial strain identifiers |