Strain identifier
BacDive ID: 135332
Type strain: 
Species: Pseudoalteromonas atlantica
Strain Designation: 512-T
Strain history: CIP <- 1993, M. Akagawa-Matsushita, Univ. of Occupational and Environmental Health, Kitakyushu, Japan: strain 512-T
NCBI tax ID(s): 288 (species)
version 9 (current version)
General
@ref: 34421
BacDive-ID: 135332
keywords: 16S sequence, Bacteria, Gram-negative, motile
description: Pseudoalteromonas atlantica 512-T is a Gram-negative, motile bacterium of the family Pseudoalteromonadaceae.
NCBI tax id
- NCBI tax id: 288
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | M. Akagawa-Matsushita 512-T. |
| 34421 | CIP <- 1993, M. Akagawa-Matsushita, Univ. of Occupational and Environmental Health, Kitakyushu, Japan: strain 512-T |
doi: 10.13145/bacdive135332.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas atlantica
- full scientific name: Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995
synonyms
- @ref: 20215
- synonym: Alteromonas atlantica
@ref: 34421
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas atlantica
strain designation: 512-T
type strain: no
Morphology
cell morphology
- @ref: 34421
- gram stain: negative
- motility: yes
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34421 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
| 34421 | Trypticase Casein Soy Agar | no | ||
| 34421 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 34421 | positive | growth | 22 |
| 67770 | positive | growth | 25 |
| 34421 | no | growth | 41 |
| 34421 | no | growth | 45 |
Physiology and metabolism
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 34421 | NaCl | no | growth | 0 % |
| 34421 | NaCl | no | growth | 2 % |
| 34421 | NaCl | no | growth | 4 % |
| 34421 | NaCl | no | growth | 6 % |
| 34421 | NaCl | no | growth | 6.5 % |
| 34421 | NaCl | no | growth | 8 % |
| 34421 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 34421 | 16947 | citrate | - | carbon source |
| 34421 | 4853 | esculin | + | hydrolysis |
| 34421 | 17632 | nitrate | - | reduction |
| 34421 | 16301 | nitrite | - | reduction |
| 34421 | 15882 | phenol | + | degradation |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 34421 | oxidase | + | |
| 34421 | beta-galactosidase | + | 3.2.1.23 |
| 34421 | alcohol dehydrogenase | - | 1.1.1.1 |
| 34421 | gelatinase | + | |
| 34421 | tween esterase | + | |
| 34421 | lecithinase | - | |
| 34421 | lysine decarboxylase | - | 4.1.1.18 |
| 34421 | ornithine decarboxylase | - | 4.1.1.17 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 34421 | Inubousaki | Japan | JPN | Asia | ||
| 67770 | Chosi City, Chiba Pref. | Japan | JPN | Asia | Seaweed (macroalgae) at Inubousaki | |
| 34421 | Inubousaki | Japan | JPN | Asia | Other, Seaweed (macroalgae) | 1993-03-11 |
Safety information
risk assessment
- @ref: 34421
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 124043
- description: Pseudoalteromonas atlantica gene for 16S rRNA, partial sequence, strain: JCM 8847.
- accession: LC379072
- length: 1458
- database: nuccore
- NCBI tax ID: 288
GC content
- @ref: 67770
- GC-content: 41
- method: high performance liquid chromatography (HPLC)
External links
@ref: 34421
culture collection no.: CIP 103670, IAM 14162, JCM 8847
straininfo link
- @ref: 92706
- straininfo: 65562
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34421 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103670 | Collection of Institut Pasteur (CIP 103670) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 92706 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID65562.1 | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |