Strain identifier
BacDive ID: 135295
Type strain:
Species: Helicobacter ganmani
Strain Designation: M2 cae, 000417
Strain history: CIP <- 2000, CCUG <- On SLW, Copenhagen, Denmark: strain 000417 <- B.R. Robertson, Univ. South Wales, Australia: strain M2 cae
NCBI tax ID(s): 60246 (species)
General
@ref: 34374
BacDive-ID: 135295
keywords: Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Helicobacter ganmani M2 cae is a mesophilic, Gram-negative, motile bacterium that was isolated from Animal, Mouse.
NCBI tax id
- NCBI tax id: 60246
- Matching level: species
strain history
- @ref: 34374
- history: CIP <- 2000, CCUG <- On SLW, Copenhagen, Denmark: strain 000417 <- B.R. Robertson, Univ. South Wales, Australia: strain M2 cae
doi: 10.13145/bacdive135295.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter ganmani
- full scientific name: Helicobacter ganmani Robertson et al. 2001
@ref: 34374
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter ganmani
strain designation: M2 cae, 000417
type strain: yes
Morphology
cell morphology
- @ref: 34374
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 34374
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
34374 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
34374 | Brucella broth | no | ||
34374 | CIP Medium 603 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=603 | |
34374 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 | |
34374 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 |
culture temp
- @ref: 34374
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
halophily
- @ref: 34374
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 3.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
34374 | 606565 | hippurate | + | hydrolysis |
34374 | 17632 | nitrate | + | reduction |
34374 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 34374
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
34374 | oxidase | + | |
34374 | gelatinase | - | |
34374 | catalase | + | 1.11.1.6 |
34374 | gamma-glutamyltransferase | + | 2.3.2.2 |
34374 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
34374 | - | - | + | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 34374
- sample type: Animal, Mouse
Safety information
risk assessment
- @ref: 34374
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 34374
culture collection no.: CIP 106846, CCUG 43526
straininfo link
- @ref: 92672
- straininfo: 87789
literature
- topic: Phylogeny
- Pubmed-ID: 11594622
- title: Helicobacter ganmani sp. nov., a urease-negative anaerobe isolated from the intestines of laboratory mice.
- authors: Robertson BR, O'Rourke JL, Vandamme P, On SL, Lee A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-5-1881
- year: 2001
- mesh: Anaerobiosis, Animals, *Animals, Laboratory, Bacterial Proteins/chemistry, DNA, Ribosomal/analysis, Electrophoresis, Polyacrylamide Gel, Helicobacter/*classification/enzymology/growth & development/isolation & purification, Helicobacter Infections/microbiology/*veterinary, Intestines/*microbiology, Mice, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rodent Diseases/*microbiology, Sequence Analysis, DNA, Urease/metabolism
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
34374 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106846 | Collection of Institut Pasteur (CIP 106846) | |
68382 | Automatically annotated from API zym | |||
92672 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID87789.1 |