Strain identifier
BacDive ID: 135233
Type strain:
Species: Acinetobacter baumannii
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 329
NCBI tax ID(s): 1217632 (strain), 470 (species)
version 9.1 (current version)
General
@ref: 34213
BacDive-ID: 135233
keywords: genome sequence, Bacteria, Gram-negative
description: Acinetobacter baumannii CIP 110432 is a Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
470 | species |
1217632 | strain |
strain history
@ref | history |
---|---|
34213 | 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 329 |
34213 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 329 |
doi: 10.13145/bacdive135233.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter baumannii
- full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986
@ref: 34213
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter baumannii
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 97.5 | ||
34213 | negative | oval-shaped | no |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
34213 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
34213 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
- @ref: 34213
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 90.637
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 92.898 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|---|
34213 | Tabor | Czech Republic | CZE | Europe | ||
34213 | Tabor | Czech Republic | CZE | Europe | Human, Tracheal secretion | 1994 |
Safety information
risk assessment
- @ref: 34213
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter baumannii NIPH 329 | GCA_000369225 | scaffold | ncbi | 1217632 |
66792 | Acinetobacter baumannii NIPH 329 | 1217632.3 | wgs | patric | 1217632 |
66792 | Acinetobacter baumannii NIPH 329 | 2529293005 | draft | img | 1217632 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.333 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.637 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.898 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99.975 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 76.179 | no |
External links
@ref: 34213
culture collection no.: CIP 110432, NIPH 329
straininfo link
- @ref: 92629
- straininfo: 412499
literature
- topic: Genetics
- Pubmed-ID: 31220143
- title: The K46 and K5 capsular polysaccharides produced by Acinetobacter baumannii NIPH 329 and SDF have related structures and the side-chain non-ulosonic acids are 4-O-acetylated by phage-encoded O-acetyltransferases.
- authors: Kenyon JJ, Arbatsky NP, Shneider MM, Popova AV, Dmitrenok AS, Kasimova AA, Shashkov AS, Hall RM, Knirel YA
- journal: PLoS One
- DOI: 10.1371/journal.pone.0218461
- year: 2019
- mesh: Acetylation, Acetyltransferases/chemistry/*genetics, Acinetobacter baumannii/chemistry/genetics/virology, Bacterial Capsules/*chemistry/metabolism/virology, Bacteriophages/enzymology/*genetics, Genome, Viral/genetics, Magnetic Resonance Spectroscopy, Sialic Acids/*chemistry/genetics
- topic2: Metabolism
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
34213 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110432 | Collection of Institut Pasteur (CIP 110432) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
92629 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID412499.1 |