Strain identifier

BacDive ID: 135233

Type strain: No

Species: Acinetobacter baumannii

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 329

NCBI tax ID(s): 1217632 (strain), 470 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 34213

BacDive-ID: 135233

keywords: genome sequence, Bacteria, Gram-negative

description: Acinetobacter baumannii CIP 110432 is a Gram-negative bacterium of the family Moraxellaceae.

NCBI tax id

NCBI tax idMatching level
470species
1217632strain

strain history

@refhistory
342132012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 329
34213CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 329

doi: 10.13145/bacdive135233.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter baumannii
  • full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

@ref: 34213

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter baumannii

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative97.5
34213negativeoval-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34213MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
34213CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

  • @ref: 34213
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: aerobe
  • confidence: 90.637

spore formation

@refspore formationconfidence
69480no92.898
69481no100

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
34213TaborCzech RepublicCZEEurope
34213TaborCzech RepublicCZEEuropeHuman, Tracheal secretion1994

Safety information

risk assessment

  • @ref: 34213
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter baumannii NIPH 329GCA_000369225scaffoldncbi1217632
66792Acinetobacter baumannii NIPH 3291217632.3wgspatric1217632
66792Acinetobacter baumannii NIPH 3292529293005draftimg1217632

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.333no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.637no
69480spore-formingspore-formingAbility to form endo- or exosporesno92.898no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.975no
69480flagellatedmotile2+Ability to perform flagellated movementno76.179no

External links

@ref: 34213

culture collection no.: CIP 110432, NIPH 329

straininfo link

  • @ref: 92629
  • straininfo: 412499

literature

  • topic: Genetics
  • Pubmed-ID: 31220143
  • title: The K46 and K5 capsular polysaccharides produced by Acinetobacter baumannii NIPH 329 and SDF have related structures and the side-chain non-ulosonic acids are 4-O-acetylated by phage-encoded O-acetyltransferases.
  • authors: Kenyon JJ, Arbatsky NP, Shneider MM, Popova AV, Dmitrenok AS, Kasimova AA, Shashkov AS, Hall RM, Knirel YA
  • journal: PLoS One
  • DOI: 10.1371/journal.pone.0218461
  • year: 2019
  • mesh: Acetylation, Acetyltransferases/chemistry/*genetics, Acinetobacter baumannii/chemistry/genetics/virology, Bacterial Capsules/*chemistry/metabolism/virology, Bacteriophages/enzymology/*genetics, Genome, Viral/genetics, Magnetic Resonance Spectroscopy, Sialic Acids/*chemistry/genetics
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34213Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110432Collection of Institut Pasteur (CIP 110432)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92629Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412499.1