Strain identifier

BacDive ID: 135178

Type strain: No

Species: Streptococcus agalactiae

Strain Designation: D136 C

Strain history: CIP <- 1982, T. Horaud, Inst. Pasteur, Paris, France: strain B 106, Streptococcus agalactiae, type III <- CDC: strain D136 C

NCBI tax ID(s): 1105256 (strain), 1311 (species)

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General

@ref: 34143

BacDive-ID: 135178

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic

description: Streptococcus agalactiae D136 C is a facultative anaerobe, mesophilic bacterium that was isolated from Human fatal septicemia.

NCBI tax id

NCBI tax idMatching level
1105256strain
1311species

strain history

  • @ref: 34143
  • history: CIP <- 1982, T. Horaud, Inst. Pasteur, Paris, France: strain B 106, Streptococcus agalactiae, type III <- CDC: strain D136 C

doi: 10.13145/bacdive135178.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus agalactiae
  • full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptococcus difficile
    20215Streptococcus difficilis

@ref: 34143

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus agalactiae

strain designation: D136 C

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.213
69480100positive
34143nopositivecoccus-shaped

colony morphology

  • @ref: 34143
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34143MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
34143CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29
34143CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
34143positivegrowth37mesophilic
34143positivegrowth25-41
34143nogrowth10psychrophilic
34143nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34143
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

  • @ref: 34143
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
34143esculin-hydrolysis4853
34143hippurate+hydrolysis606565
34143nitrate+reduction17632
34143nitrite-reduction16301

antibiotic resistance

  • @ref: 34143
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 34143
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 34143
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
34143oxidase-
34143beta-galactosidase+3.2.1.23
34143alcohol dehydrogenase+1.1.1.1
34143catalase-1.11.1.6
34143gamma-glutamyltransferase-2.3.2.2
34143lysine decarboxylase-4.1.1.18
34143ornithine decarboxylase-4.1.1.17
34143urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34143-++--+----++--++----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
34143+---+----++++--------+-++/-+-++-++---+------------+

Isolation, sampling and environmental information

isolation

@refsample type
49747Human fatal septicemia
34143Fatal septicemia

isolation source categories

Cat1Cat2Cat3
#Host#Microbial#Bacteria
#Host Body Product#Fluids#Blood
#Host#Human
#Infection#Inflammation

Safety information

risk assessment

  • @ref: 34143
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus agalactiae CCUG 29782GCA_000310485contigncbi1105256
66792Streptococcus agalactiae CCUG 297821105256.3wgspatric1105256
66792Streptococcus agalactiae CCUG 297822706794500draftimg1105256

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno97.152no
flagellatedno98.518no
gram-positiveyes93.555no
anaerobicno93.972no
aerobicno95.039no
halophileyes88.354no
spore-formingno95.239no
thermophileno99.52no
glucose-utilyes90.586no
glucose-fermentyes88.26no

External links

@ref: 34143

culture collection no.: CIP 82.45, ATCC 12403, CCUG 29782, CNCTC 4/70

straininfo link

  • @ref: 92583
  • straininfo: 35570

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11846725The putative R1 protein of Streptococcus agalactiae as serotype marker and target of protective antibodies.Moyo SR, Maeland JA, Lyng RVAPMIS10.1034/j.1600-0463.2001.091206.x2001Animals, Antibodies, Bacterial/*immunology, Bacterial Proteins/*immunology, Biomarkers, Cross Reactions, Mice, Rabbits, Serotyping, Streptococcus agalactiae/classification/*immunology
Pathogenicity31860180Vagino-rectal colonization prevalence by Streptococcus agalactiae and its susceptibility profile in pregnant women attending a third-level hospitalCampo CH, Martinez MF, Otero JC, Rincon GBiomedica10.7705/biomedica.45142019Adult, Colombia, Cross-Sectional Studies, Drug Resistance, Bacterial, Female, Humans, Perineum/microbiology, Pregnancy, Pregnancy Trimester, Third, Rectum/*microbiology, Streptococcus agalactiae/drug effects/*isolation & purification, Tertiary Care Centers, Vagina/*microbiology, Young AdultEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34143Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.45Collection of Institut Pasteur (CIP 82.45)
49747Curators of the CCUGhttps://www.ccug.se/strain?id=29782Culture Collection University of Gothenburg (CCUG) (CCUG 29782)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92583Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35570.1