Strain identifier
BacDive ID: 135162
Type strain: 
Species: Lactiplantibacillus plantarum
Strain history: CIP <- 1988, NCTC, Lactobacillus odonlyticus <- 1922, J.W.W. McIntosh, Lactobacillus acidophilus-odonlyticus, London, UK
NCBI tax ID(s): 1590 (species)
version 9.3 (current version)
General
@ref: 34119
BacDive-ID: 135162
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Lactiplantibacillus plantarum CIP 103132 is a mesophilic, Gram-positive bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1590
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | NCFB 327 <-- NCTC 1407 <-- M. E. Sharpe, NIRD <-- J. W. N. McIntosh. |
| 34119 | CIP <- 1988, NCTC, Lactobacillus odonlyticus <- 1922, J.W.W. McIntosh, Lactobacillus acidophilus-odonlyticus, London, UK |
doi: 10.13145/bacdive135162.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactiplantibacillus
- species: Lactiplantibacillus plantarum
- full scientific name: Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus arizonensis 20215 Streptobacterium plantarum 20215 Lactobacillus plantarum
@ref: 34119
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus plantarum
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | positive | 93.097 |
| 125439 | positive | 92.6 |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34119 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
| 34119 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 34119 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 94
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 34119 | London | United Kingdom | GBR | Europe | ||
| 67770 | Dental caries | |||||
| 34119 | London | United Kingdom | GBR | Europe | Human, Dental caries | 1922 |
Safety information
risk assessment
- @ref: 34119
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactiplantibacillus plantarum NCTC1407 | GCA_900618215 | contig | ncbi | 1590 |
| 66792 | Lactobacillus acidophilus strain NCTC1407 | 1579.248 | wgs | patric | 1579 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.097 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 87.591 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 81.827 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.96 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.471 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 62.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 61.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 92.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 94 |
External links
@ref: 34119
culture collection no.: CIP 103132, NCDO 327, NCTC 1407, NCIMB 1407, JCM 8132, ATCC 11974, LMG 11459, NCFB 327
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34119 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103132 | Collection of Institut Pasteur (CIP 103132) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |