Strain identifier

BacDive ID: 135082

Type strain: Yes

Species: Streptomonospora alba

Strain history: CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 90003 <- DSMZ <- CCTCC <- CCRC

NCBI tax ID(s): 183763 (species)

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General

@ref: 11903

BacDive-ID: 135082

DSM-Number: 44588

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic

description: Streptomonospora alba CIP 107979 is a facultative anaerobe, spore-forming, mesophilic bacterium of the family Nocardiopsidaceae.

NCBI tax id

  • NCBI tax id: 183763
  • Matching level: species

strain history

@refhistory
11903<- W.-J. Li, YIM <- CCTCC
33865CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 90003 <- DSMZ <- CCTCC <- CCRC

doi: 10.13145/bacdive135082.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Streptomonospora
  • species: Streptomonospora alba
  • full scientific name: Streptomonospora alba Li et al. 2003

@ref: 11903

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Streptomonospora

species: Streptomonospora alba

full scientific name: Streptomonospora alba Li et al. 2003 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no97.234
69480100positive
33865nopositiverod-shaped

multimedia

  • @ref: 11903
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44588.jpg
  • caption: Medium 1159 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11903GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)yeshttps://mediadive.dsmz.de/medium/1159Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
33865Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
11903BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33865CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
11903positivegrowth28mesophilic
33865positivegrowth30mesophilic
33865positivegrowth25-37mesophilic
33865nogrowth10psychrophilic
33865nogrowth41thermophilic
33865nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33865
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481yes99
69480yes99.684

halophily

@refsaltgrowthtested relationconcentration
33865NaClpositivegrowth2-6 %
33865NaClnogrowth0 %
33865NaClnogrowth8 %
33865NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3386516947citrate-carbon source
338654853esculin-hydrolysis
33865606565hippurate-hydrolysis
3386517632nitrate+reduction
3386516301nitrite-reduction
3386517632nitrate+respiration

metabolite production

  • @ref: 33865
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3386515688acetoin-
3386517234glucose-

enzymes

@refvalueactivityec
33865oxidase-
33865beta-galactosidase+3.2.1.23
33865alcohol dehydrogenase+1.1.1.1
33865gelatinase+
33865catalase+1.11.1.6
33865gamma-glutamyltransferase-2.3.2.2
33865lysine decarboxylase-4.1.1.18
33865ornithine decarboxylase-4.1.1.17
33865phenylalanine ammonia-lyase-4.3.1.24
33865tryptophan deaminase-
33865urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33865-+++-+-----+-+-+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
33865Xinjiang Prov.ChinaCHNAsia
11903Xinjiang provinceChinaCHNAsiasoil in hypersaline habitats
33865XinjiangChinaCHNAsiaEnvironment, Soil, hypersaline1998

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_839.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_505;97_580;98_667;99_839&stattab=map
  • Last taxonomy: Streptomonospora
  • 16S sequence: AF462347
  • Sequence Identity:
  • Total samples: 7
  • soil counts: 5
  • aquatic counts: 1
  • animal counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
119031Risk group (German classification)
338651Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
11903Streptomonospora albus 16S ribosomal RNA gene, partial sequenceAF4623471487ena183763
11903Streptomonospora alba strain YIM 90003, whole genome shotgun sequencing projectDSM_445885914311ena183763

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomonospora alba YIM 90003GCA_000826685contigncbi183763
66792Streptomonospora alba YIM 90003183763.4wgspatric183763
66792Streptomonospora alba YIM 900032627854128draftimg183763

GC content

  • @ref: 11903
  • GC-content: 74.4
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
motileno91.803no
gram-positiveyes86.216no
anaerobicno99no
aerobicyes93.725no
halophileyes65.03no
spore-formingyes88.61no
glucose-utilyes86.604no
flagellatedno97.909no
glucose-fermentno91.987no
thermophileno96.625no

External links

@ref: 11903

culture collection no.: CIP 107979, DSM 44588, CCTCC AA 001013, CCRC 16312, JCM 12680, YIM 90003

straininfo link

  • @ref: 92505
  • straininfo: 265477

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny13130027Streptomonospora alba sp. nov., a novel halophilic actinomycete, and emended description of the genus Streptomonospora Cui et al. 2001.Li WJ, Xu P, Zhang LP, Tang SK, Cui XL, Mao PH, Xu LH, Schumann P, Stackebrandt E, Jiang CLInt J Syst Evol Microbiol10.1099/ijs.0.02543-02003Actinomycetales/*classification/genetics/isolation & purification/metabolism, Cell Wall/chemistry, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Peptidoglycan/chemistry, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sodium Chloride, Soil Microbiology, Vitamin K 2/chemistryGenetics
Phylogeny24858572Streptomonospora algeriensis sp. nov., a halophilic actinomycete isolated from soil in Algeria.Meklat A, Bouras N, Riba A, Zitouni A, Mathieu F, Rohde M, Schumann P, Sproer C, Klenk HP, Sabaou NAntonie Van Leeuwenhoek10.1007/s10482-014-0195-32014Actinobacteria/*classification/genetics/*isolation & purification/physiology, Algeria, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny34355285Streptomonospora litoralis sp. nov., a halophilic thiopeptides producer isolated from sand collected at Cuxhaven beach.Khodamoradi S, Hahnke RL, Mast Y, Schumann P, Kampfer P, Steinert M, Ruckert C, Surup F, Rohde M, Wink JAntonie Van Leeuwenhoek10.1007/s10482-021-01609-42021Actinobacteria, DNA, Bacterial/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sand

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11903Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44588)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44588
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33865Curators of the CIPCollection of Institut Pasteur (CIP 107979)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107979
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
92505Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265477.1StrainInfo: A central database for resolving microbial strain identifiers