Strain identifier

BacDive ID: 13502

Type strain: Yes

Species: Actinomycetospora cinnamomea

Strain Designation: IY07-53

Strain history: KACC 14250 <-- NBRC 105527 <-- Y. Ishida IY07-53.

NCBI tax ID(s): 663609 (species)

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General

@ref: 18185

BacDive-ID: 13502

DSM-Number: 45771

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Actinomycetospora cinnamomea IY07-53 is a mesophilic bacterium that builds an aerial mycelium and was isolated from paddy soil.

NCBI tax id

  • NCBI tax id: 663609
  • Matching level: species

strain history

@refhistory
18185<- S.-W. Kwon, KACC; KACC 14250 <- Y. Ishida; IY07-53
67770KACC 14250 <-- NBRC 105527 <-- Y. Ishida IY07-53.

doi: 10.13145/bacdive13502.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinomycetospora
  • species: Actinomycetospora cinnamomea
  • full scientific name: Actinomycetospora cinnamomea Tamura et al. 2011

@ref: 18185

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinomycetospora

species: Actinomycetospora cinnamomea

full scientific name: Actinomycetospora cinnamomea Tamura et al. 2011

strain designation: IY07-53

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.648
69480100positive

colony morphology

@refcolony colormedium used
69430Daffodil yellow (1007)ISP 2
69430Saffron yellow (1017)ISP 3
69430Saffron yellow (1017)ISP 4
69430Saffron yellow (1017)ISP 5
69430Saffron yellow (1017)ISP 7
69430Yellow orange (2000)ISP 6
69430Zinc yellow (1018)suter with tyrosine
69430Zinc yellow (1018)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69430noAerial myceliumISP 2
69430noAerial myceliumISP 3
69430yesAerial myceliumISP 4
69430noAerial myceliumISP 5
69430noAerial myceliumISP 6
69430noAerial myceliumISP 7
69430noAerial myceliumsuter with tyrosine
69430noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69430noMelanin
69430nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69430DSM_45771_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69430DSM_45771_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 18185
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18185positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

halophily

  • @ref: 69430
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-7.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6943022599arabinose+growth
6943062968cellulose+/-growth
6943028757fructose+growth
6943017234glucose+growth
6943017268inositol+growth
6943037684mannose+growth
6943016634raffinose+/-growth
6943026546rhamnose+growth
6943017992sucrose+growth
6943018222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382esterase (C 4)+
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69430-------------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69430+/-++/--+/------+/---------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18185paddy soilIriomote Island, OkinawaJapanJPNAsia
67770Paddy soilIriomote Island, Okinawa Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Field
#Host#Plants#Herbaceous plants (Grass,Crops)
#Condition#Anoxic (anaerobic)
#Condition#Humid

Safety information

risk assessment

  • @ref: 18185
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18185
  • description: Actinomycetospora cinnamomea gene for 16S rRNA, partial sequence, strain: IY07-53
  • accession: AB514520
  • length: 1487
  • database: ena
  • NCBI tax ID: 663609

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinomycetospora cinnamomea strain DSM 45771663609.3wgspatric663609
66792Actinomycetospora cinnamomea DSM 457712756170281draftimg663609
67770Actinomycetospora cinnamomea DSM 45771GCA_003096675scaffoldncbi663609

GC content

@refGC-contentmethod
1818574
6777074high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes87no
gram-positiveyes86.387no
anaerobicno98.565no
halophileno72.179no
spore-formingyes51.197no
glucose-utilyes85.335yes
thermophileno98.285no
flagellatedno98.24no
motileno88.463no
aerobicyes90.422no
glucose-fermentno90.35yes

External links

@ref: 18185

culture collection no.: DSM 45771, KACC 14250, NBRC 105527, JCM 17980

straininfo link

  • @ref: 82694
  • straininfo: 402901

literature

  • topic: Phylogeny
  • Pubmed-ID: 20622052
  • title: Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.
  • authors: Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.024166-0
  • year: 2010
  • mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18185Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45771)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45771
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69430Wink, J.https://cdn.dsmz.de/wink/DSM%2045771.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
82694Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402901.1StrainInfo: A central database for resolving microbial strain identifiers