Strain identifier
BacDive ID: 134776
Type strain: 
Species: Aeromonas salmonicida
Strain history: CIP <- 1963, O. Lysenko, Inst. Biol., Prague, Czechoslovakia <- CCEB
NCBI tax ID(s): 645 (species)
version 8.1 (current version)
General
@ref: 33421
BacDive-ID: 134776
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Aeromonas salmonicida CIP 63.25 is a mesophilic, motile bacterium that was isolated from Country of origin unknown.
NCBI tax id
- NCBI tax id: 645
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | NCTC 10402 <-- K. P. Carpenter <-- B. P. Eddy <-- CCEB 382. |
| 33421 | CIP <- 1963, O. Lysenko, Inst. Biol., Prague, Czechoslovakia <- CCEB |
doi: 10.13145/bacdive134776.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas salmonicida
- full scientific name: Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium salmonicida
@ref: 33421
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas salmonicida
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.895 | |
| 69480 | 99.997 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 33421 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 33421 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 33421 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.976 |
Isolation, sampling and environmental information
isolation
- @ref: 33421
- sample type: Country of origin unknown
taxonmaps
- @ref: 69479
- File name: preview.99_485.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_485&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: LC505474
- Sequence Identity:
- Total samples: 313
- soil counts: 16
- aquatic counts: 156
- animal counts: 131
- plant counts: 10
Safety information
risk assessment
- @ref: 33421
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Aeromonas salmonicida JCM 8062 gene for 16S ribosomal RNA, partial sequence
- accession: LC505474
- length: 1467
- database: ena
- NCBI tax ID: 645
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aeromonas salmonicida strain NCTC10402 | 645.119 | wgs | patric | 645 |
| 66792 | Aeromonas salmonicida NCTC 10402 | 2922027972 | draft | img | 645 |
| 67770 | Aeromonas salmonicida NCTC10402 | GCA_900445125 | contig | ncbi | 645 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.848 | no |
| anaerobic | no | 96.362 | no |
| halophile | no | 89.785 | no |
| spore-forming | no | 95.193 | no |
| glucose-util | yes | 88.525 | no |
| thermophile | no | 99.535 | yes |
| flagellated | yes | 92.29 | no |
| aerobic | yes | 85.572 | no |
| motile | yes | 89.654 | no |
| glucose-ferment | yes | 88.231 | no |
External links
@ref: 33421
culture collection no.: CIP 63.25, CCEB 382, NCTC 10402, JCM 8062
straininfo link
- @ref: 92238
- straininfo: 65231
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 33421 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.25 | Collection of Institut Pasteur (CIP 63.25) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 92238 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID65231.1 |