Strain identifier
BacDive ID: 134588
Type strain:
Species: Marinobacterium iners
Strain history: CIP <- 2000, IAM, Pseudomonas iners <- S. Ikemoto: strain AJ 2265
NCBI tax ID(s): 48076 (species)
General
@ref: 33002
BacDive-ID: 134588
keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped
description: Marinobacterium iners CIP 106746 is an obligate aerobe, Gram-negative, motile bacterium of the family Alteromonadaceae.
NCBI tax id
- NCBI tax id: 48076
- Matching level: species
strain history
@ref | history |
---|---|
67770 | IAM 1419 <-- S. Ikemoto KS 0046 <-- H. Iizuka and K. Komagata No. 52. |
33002 | CIP <- 2000, IAM, Pseudomonas iners <- S. Ikemoto: strain AJ 2265 |
doi: 10.13145/bacdive134588.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacterium
- species: Marinobacterium iners
- full scientific name: Marinobacterium iners (Iizuka and Komagata 1964) Tindall 2020
synonyms
@ref synonym 20215 Pseudomonas iners 20215 Marinobacterium georgiense
@ref: 33002
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacterium
species: Marinobacterium georgiense
type strain: yes
Morphology
cell morphology
- @ref: 33002
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 33002
- production: no
- name: Pyocyanin
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
33002 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
33002 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
33002 | positive | growth | 25 |
67770 | positive | growth | 25 |
33002 | positive | growth | 30-37 |
33002 | no | growth | 5 |
33002 | no | growth | 10 |
33002 | no | growth | 41 |
Physiology and metabolism
oxygen tolerance
- @ref: 33002
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
33002 | NaCl | positive | growth | 0-8 % |
33002 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
33002 | 4853 | esculin | - | hydrolysis |
33002 | 17632 | nitrate | - | reduction |
33002 | 16301 | nitrite | - | reduction |
33002 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 33002
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 33002
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
33002 | oxidase | + | |
33002 | beta-galactosidase | - | 3.2.1.23 |
33002 | alcohol dehydrogenase | - | 1.1.1.1 |
33002 | gelatinase | - | |
33002 | amylase | - | |
33002 | DNase | - | |
33002 | caseinase | - | 3.4.21.50 |
33002 | catalase | + | 1.11.1.6 |
33002 | tween esterase | - | |
33002 | lecithinase | - | |
33002 | lipase | - | |
33002 | lysine decarboxylase | - | 4.1.1.18 |
33002 | ornithine decarboxylase | - | 4.1.1.17 |
33002 | protease | - | |
33002 | tryptophan deaminase | - | |
33002 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
33002 | - | + | + | + | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|
33002 | Japan | JPN | Asia | ||
67770 | Japan | JPN | Asia | Oil brine | |
33002 | Japan | JPN | Asia | Oil brine | 1957 |
taxonmaps
- @ref: 69479
- File name: preview.99_83980.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_6773;97_8107;98_57388;99_83980&stattab=map
- Last taxonomy: Marinobacterium georgiense subclade
- 16S sequence: AB681723
- Sequence Identity:
- Total samples: 151
- soil counts: 10
- aquatic counts: 124
- animal counts: 17
Safety information
risk assessment
- @ref: 33002
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Marinobacterium georgiense gene for 16S rRNA, strain: IAM 1419 | AB021408 | 1509 | nuccore | 48076 |
67770 | Marinobacterium georgiense gene for 16S rRNA, partial sequence, strain: NBRC 102196 | AB681723 | 1468 | nuccore | 48076 |
External links
@ref: 33002
culture collection no.: CIP 106746, IAM 1419, ATCC 33635, JCM 20159, AJ 2265, LMG 21613, NBRC 102196, NCIMB 13639, NBRC 10219
straininfo link
- @ref: 92091
- straininfo: 60947
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
33002 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106746 | Collection of Institut Pasteur (CIP 106746) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
92091 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID60947.1 |