Strain identifier

BacDive ID: 134588

Type strain: Yes

Species: Marinobacterium iners

Strain history: CIP <- 2000, IAM, Pseudomonas iners <- S. Ikemoto: strain AJ 2265

NCBI tax ID(s): 48076 (species)

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General

@ref: 33002

BacDive-ID: 134588

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped

description: Marinobacterium iners CIP 106746 is an obligate aerobe, Gram-negative, motile bacterium of the family Alteromonadaceae.

NCBI tax id

  • NCBI tax id: 48076
  • Matching level: species

strain history

@refhistory
67770IAM 1419 <-- S. Ikemoto KS 0046 <-- H. Iizuka and K. Komagata No. 52.
33002CIP <- 2000, IAM, Pseudomonas iners <- S. Ikemoto: strain AJ 2265

doi: 10.13145/bacdive134588.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacterium
  • species: Marinobacterium iners
  • full scientific name: Marinobacterium iners (Iizuka and Komagata 1964) Tindall 2020
  • synonyms

    @refsynonym
    20215Pseudomonas iners
    20215Marinobacterium georgiense

@ref: 33002

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacterium

species: Marinobacterium georgiense

type strain: yes

Morphology

cell morphology

  • @ref: 33002
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 33002
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33002MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33002CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
33002positivegrowth25
67770positivegrowth25
33002positivegrowth30-37
33002nogrowth5
33002nogrowth10
33002nogrowth41

Physiology and metabolism

oxygen tolerance

  • @ref: 33002
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
33002NaClpositivegrowth0-8 %
33002NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
330024853esculin-hydrolysis
3300217632nitrate-reduction
3300216301nitrite-reduction
3300217632nitrate-respiration

antibiotic resistance

  • @ref: 33002
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 33002
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
33002oxidase+
33002beta-galactosidase-3.2.1.23
33002alcohol dehydrogenase-1.1.1.1
33002gelatinase-
33002amylase-
33002DNase-
33002caseinase-3.4.21.50
33002catalase+1.11.1.6
33002tween esterase-
33002lecithinase-
33002lipase-
33002lysine decarboxylase-4.1.1.18
33002ornithine decarboxylase-4.1.1.17
33002protease-
33002tryptophan deaminase-
33002urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33002-+++-++---++--------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
33002JapanJPNAsia
67770JapanJPNAsiaOil brine
33002JapanJPNAsiaOil brine1957

taxonmaps

  • @ref: 69479
  • File name: preview.99_83980.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_6773;97_8107;98_57388;99_83980&stattab=map
  • Last taxonomy: Marinobacterium georgiense subclade
  • 16S sequence: AB681723
  • Sequence Identity:
  • Total samples: 151
  • soil counts: 10
  • aquatic counts: 124
  • animal counts: 17

Safety information

risk assessment

  • @ref: 33002
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Marinobacterium georgiense gene for 16S rRNA, strain: IAM 1419AB0214081509nuccore48076
67770Marinobacterium georgiense gene for 16S rRNA, partial sequence, strain: NBRC 102196AB6817231468nuccore48076

External links

@ref: 33002

culture collection no.: CIP 106746, IAM 1419, ATCC 33635, JCM 20159, AJ 2265, LMG 21613, NBRC 102196, NCIMB 13639, NBRC 10219

straininfo link

  • @ref: 92091
  • straininfo: 60947

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33002Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106746Collection of Institut Pasteur (CIP 106746)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
92091Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID60947.1