Strain identifier

BacDive ID: 134476

Type strain: Yes

Species: Algicola bacteriolytica

Strain Designation: E8R

Strain history: CIP <- 1998, T. Sawabe, Hokkaido Univ., Hakodate, Japan: strain E8R

NCBI tax ID(s): 71383 (species)

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General

@ref: 32819

BacDive-ID: 134476

keywords: 16S sequence, Bacteria, psychrophilic, Gram-negative, motile, rod-shaped

description: Algicola bacteriolytica E8R is a psychrophilic, Gram-negative, motile bacterium of the family Pseudoalteromonadaceae.

NCBI tax id

  • NCBI tax id: 71383
  • Matching level: species

strain history

@refhistory
328191998, T. Sawabe, Hokkaido Univ., Hakodate, Japan: strain E8R
67770IAM 14595 <-- T. Sawabe E8R.
32819CIP <- 1998, T. Sawabe, Hokkaido Univ., Hakodate, Japan: strain E8R

doi: 10.13145/bacdive134476.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Algicola
  • species: Algicola bacteriolytica
  • full scientific name: Algicola bacteriolytica (Sawabe et al. 1998) Ivanova et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Pseudoalteromonas bacteriolytica

@ref: 32819

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Algicola

species: Algicola bacteriolytica

strain designation: E8R

type strain: yes

Morphology

cell morphology

  • @ref: 32819
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32819MEDIUM 294 - for Pseudoalteromonas bacteriolyticayesDistilled water make up to (250.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Casitone (1.000 g);Ammonium iron (III) citrate (0.200 g);Soytone peptone (1.000 g);Synthetic sea solution - M0216 (750.000 ml)
32819CIP Medium 294yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=294

culture temp

@refgrowthtypetemperaturerange
32819positivegrowth22psychrophilic
67770positivegrowth20psychrophilic
32819positivegrowth10-37
32819nogrowth5psychrophilic
32819nogrowth41thermophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
32819esculin-hydrolysis4853
32819nitrate-reduction17632
32819nitrite-reduction16301

metabolite production

  • @ref: 32819
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32819oxidase+
32819beta-galactosidase-3.2.1.23
32819alcohol dehydrogenase-1.1.1.1
32819gelatinase+
32819amylase+
32819DNase+
32819caseinase+3.4.21.50
32819catalase-1.11.1.6
32819tween esterase+
32819lecithinase+
32819lipase+
32819lysine decarboxylase-4.1.1.18
32819ornithine decarboxylase-4.1.1.17
32819protease+
32819tryptophan deaminase-
32819urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
32819-++++++---++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
32819------------------------+/---+/---+/-+/----+/-+/-------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
32819---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typehost speciesisolation date
32819Minami-KayabeJapanJPNAsia
67770Minamikayabe, HokkaidoJapanJPNAsiaRed-spotted beds of makonbu, Laminaria japonicaLaminaria japonica
32819MinamikayabeJapanJPNAsiaCulture bed of Laminaria seed1986

Safety information

risk assessment

  • @ref: 32819
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Pseudoalteromonas bacteriolytica gene for 16S rRNA, partial sequence
  • accession: D89929
  • length: 1490
  • database: ena
  • NCBI tax ID: 71383

GC content

  • @ref: 67770
  • GC-content: 46
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 32819

culture collection no.: CIP 105725, IAM 14595, JCM 21270, ATCC 700679

straininfo link

  • @ref: 91997
  • straininfo: 46249

literature

  • topic: Phylogeny
  • Pubmed-ID: 9734030
  • title: Pseudoalteromonas bacteriolytica sp. nov., a marine bacterium that is the causative agent of red spot disease of Laminaria japonica.
  • authors: Sawabe T, Makino H, Tatsumi M, Nakano K, Tajima K, Iqbal MM, Yumoto I, Ezura Y, Christen R
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-48-3-769
  • year: 1998
  • mesh: Base Sequence, DNA, Bacterial/analysis, DNA, Ribosomal/chemistry, Gram-Negative Aerobic Bacteria/*classification/genetics/metabolism, Laminaria/*microbiology, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32819Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105725Collection of Institut Pasteur (CIP 105725)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
91997Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46249.1