Strain identifier
BacDive ID: 134333
Type strain:
Species: Tenacibaculum soleae
Strain Designation: LL04 12.1.7
NCBI tax ID(s): 447689 (species)
version 8.1 (current version)
General
@ref: 32471
BacDive-ID: 134333
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Tenacibaculum soleae LL04 12.1.7 is an aerobe, Gram-negative, motile bacterium that was isolated from Diseased sole.
NCBI tax id
- NCBI tax id: 447689
- Matching level: species
doi: 10.13145/bacdive134333.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Tenacibaculum
- species: Tenacibaculum soleae
- full scientific name: Tenacibaculum soleae Piñeiro-Vidal et al. 2008
@ref: 32471
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Tenacibaculum
species: Tenacibaculum soleae
strain designation: LL04 12.1.7
type strain: yes
Morphology
cell morphology
- @ref: 32471
- gram stain: negative
- cell length: 14 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 32471
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
32471 | positive | growth | 14-30 | |
32471 | positive | optimum | 23.5 | psychrophilic |
culture pH
- @ref: 32471
- ability: positive
- type: growth
- pH: 06-08
Physiology and metabolism
oxygen tolerance
- @ref: 32471
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32471 | 28260 | galactose | + | carbon source |
32471 | 17234 | glucose | + | carbon source |
32471 | 29987 | glutamate | + | carbon source |
32471 | 26271 | proline | + | carbon source |
32471 | 33942 | ribose | + | carbon source |
32471 | 17992 | sucrose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32471 | alkaline phosphatase | + | 3.1.3.1 |
32471 | catalase | + | 1.11.1.6 |
32471 | gelatinase | + | |
32471 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 32471
- sample type: Diseased sole
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
taxonmaps
- @ref: 69479
- File name: preview.99_6508.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_3080;97_3780;98_4802;99_6508&stattab=map
- Last taxonomy: Tenacibaculum soleae subclade
- 16S sequence: AM746476
- Sequence Identity:
- Total samples: 707
- soil counts: 25
- aquatic counts: 615
- animal counts: 65
- plant counts: 2
Sequence information
16S sequences
- @ref: 32471
- description: Tenacibaculum soleae partial 16S rRNA gene, type strain LL04 12.1.7
- accession: AM746476
- length: 1506
- database: nuccore
- NCBI tax ID: 447689
GC content
- @ref: 32471
- GC-content: 29.8
External links
@ref: 32471
culture collection no.: CECT 7292, NCIMB 14368
straininfo link
- @ref: 91900
- straininfo: 343821
literature
- topic: Phylogeny
- Pubmed-ID: 18398187
- title: Tenacibaculum soleae sp. nov., isolated from diseased sole (Solea senegalensis Kaup).
- authors: Pineiro-Vidal M, Carballas CG, Gomez-Barreiro O, Riaza A, Santos Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65539-0
- year: 2008
- mesh: Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/metabolism, Fish Diseases/microbiology, Flatfishes/*microbiology, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic
- topic2: Metabolism
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
32471 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28692 | 28776041 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
91900 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID343821.1 |