Strain identifier

BacDive ID: 134333

Type strain: Yes

Species: Tenacibaculum soleae

Strain Designation: LL04 12.1.7

NCBI tax ID(s): 447689 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 32471

BacDive-ID: 134333

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Tenacibaculum soleae LL04 12.1.7 is an aerobe, Gram-negative, motile bacterium that was isolated from Diseased sole.

NCBI tax id

  • NCBI tax id: 447689
  • Matching level: species

doi: 10.13145/bacdive134333.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Tenacibaculum
  • species: Tenacibaculum soleae
  • full scientific name: Tenacibaculum soleae Piñeiro-Vidal et al. 2008

@ref: 32471

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Tenacibaculum

species: Tenacibaculum soleae

strain designation: LL04 12.1.7

type strain: yes

Morphology

cell morphology

  • @ref: 32471
  • gram stain: negative
  • cell length: 14 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

pigmentation

  • @ref: 32471
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32471positivegrowth14-30
32471positiveoptimum23.5psychrophilic

culture pH

  • @ref: 32471
  • ability: positive
  • type: growth
  • pH: 06-08

Physiology and metabolism

oxygen tolerance

  • @ref: 32471
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3247128260galactose+carbon source
3247117234glucose+carbon source
3247129987glutamate+carbon source
3247126271proline+carbon source
3247133942ribose+carbon source
3247117992sucrose+carbon source

enzymes

@refvalueactivityec
32471alkaline phosphatase+3.1.3.1
32471catalase+1.11.1.6
32471gelatinase+
32471cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 32471
  • sample type: Diseased sole

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

taxonmaps

  • @ref: 69479
  • File name: preview.99_6508.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_3080;97_3780;98_4802;99_6508&stattab=map
  • Last taxonomy: Tenacibaculum soleae subclade
  • 16S sequence: AM746476
  • Sequence Identity:
  • Total samples: 707
  • soil counts: 25
  • aquatic counts: 615
  • animal counts: 65
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 32471
  • description: Tenacibaculum soleae partial 16S rRNA gene, type strain LL04 12.1.7
  • accession: AM746476
  • length: 1506
  • database: nuccore
  • NCBI tax ID: 447689

GC content

  • @ref: 32471
  • GC-content: 29.8

External links

@ref: 32471

culture collection no.: CECT 7292, NCIMB 14368

straininfo link

  • @ref: 91900
  • straininfo: 343821

literature

  • topic: Phylogeny
  • Pubmed-ID: 18398187
  • title: Tenacibaculum soleae sp. nov., isolated from diseased sole (Solea senegalensis Kaup).
  • authors: Pineiro-Vidal M, Carballas CG, Gomez-Barreiro O, Riaza A, Santos Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65539-0
  • year: 2008
  • mesh: Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/metabolism, Fish Diseases/microbiology, Flatfishes/*microbiology, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32471Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172869228776041
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91900Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID343821.1